Transcript Information: S_Transcript_37190.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.42924195540614
Replicate 20.59308574079341
Replicate 30.79323596058497
Condition 2: 8 Hour
Replicate 11.0318737250226
Replicate 21.4433450735308
Replicate 31.7190199681437
Condition 3: 24 Hour
Replicate 10.58722805082242
Replicate 20.60924224667601
Replicate 30.54240955709927


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_37190.p3 GENE.S_Transcript_37190~~S_Transcript_37190.p3 ORF type:complete len:186 (+),score=26.45,UBN2_3|PF14244.2|8.9e-32 S_Transcript_37190:5161-5718(+)
ATGGGTGACGACGGGAAGAAGGATCAGAATCAAGGAATGTACATCAACTCCGATTTGTCCTCTCCATATTACCTTCATCCTTCAGATGGGCCAGGTTTGATTTTGACTGACATTAAATTAAATGGAAAAAATTATGCTGATTGGGAAACCTCTGTTTTAATTGGTTTGGAATCAAAAAATAAAGTTGGCTTCGTTGATGGTTCAGTTCCAAAACCAAAAGAAGATGATAAAAATTTTGGGGCTTGGAAAATTGTCAATTCCATGTTACTTGCTTGGATTCTTAGAACCCTAGATAGTAGTGTTTATGCTAGTGTTCGTAGCATAAAAGATGTGAAAGTCTTATGGGATGAATTGAAAACTCGCTTTGATACCATGACAAAATGTAAAGTGAGGCTTTCTGTCCTGCCCCTCTTATTGACATACAGAATATTTATAAAAGAAGATACAATAGATACTAAAGAACATTCTAGACAATTACACAAAGATTACAATAATTATACAAATATACTTGAGTCAAATTGCTCCAAGAACAAAGAAAATCACCAATTGAACATATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_37190.p3 GENE.S_Transcript_37190~~S_Transcript_37190.p3 ORF type:complete len:186 (+),score=26.45,UBN2_3|PF14244.2|8.9e-32 S_Transcript_37190:5161-5718(+)
MGDDGKKDQNQGMYINSDLSSPYYLHPSDGPGLILTDIKLNGKNYADWETSVLIGLESKNKVGFVDGSVPKPKEDDKNFGAWKIVNSMLLAWILRTLDSSVYASVRSIKDVKVLWDELKTRFDTMTKCKVRLSVLPLLLTYRIFIKEDTIDTKEHSRQLHKDYNNYTNILESNCSKNKENHQLNI*

Click here to download the sequence:
Link to NCBI Protein BLAST