Transcript Information: S_Transcript_372216.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value4.3E-70
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.28236606085072
Replicate 20.64374187037842
Replicate 30.14675917307905
Condition 2: 8 Hour
Replicate 10.45252817649089
Replicate 20.11868354716035
Replicate 30.39578496879276
Condition 3: 24 Hour
Replicate 10.17383196411613
Replicate 20.12023242215569
Replicate 30.20070592364814


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_372216.p1 GENE.S_Transcript_372216~~S_Transcript_372216.p1 ORF type:complete len:377 (+),score=54.77,UBN2|PF14223.2|1.4e-17,UBN2_3|PF14244.2|3.5e-14,UBN2_2|PF14227.2|6.7e-10,Retrotrans_gag|PF03732.13|1.8e+03,Retrotrans_gag|PF03732.13|3.4e-08 S_Transcript_372216:105-1235(+)
ATGGCCACCAAGCCTACCCCTCCTGCCTTTGCTGTTTCTAATATCAAAACATACATTTCCATCACTCTCGATCTTACCGACCCTGACTACGAGACATGGAAGGAACTATTTGAGACTCATGCCACCACTTTCGACGTCCTCGGTCACCTCGATGGTACGTCCAAGCCGACCTCTGACACTGACACGGAGTGGAAACGGCTTTACTCTCTTGTCAAAACCTGGCTTTATGGCACGATTTCTTCTTCTCTTTTCCGAATGGTTGTCACTGGAAAGAAACCAACGGCCCACCACATCTGGACCAACATTGAGTCAGTTTTTCGTGACAACAAAGAGGCGCGTGCTGTGGCATTGGAGCATGAATTCCGCACTCTCAAATTGGGTGATATGTCTGCCAATGCCTACTGCCATCGCCTTAAGACACTTGCCGACATGCTTGCCGGCGTTGATGCTCCTGTCAGTGACAAGACTCTCGTTACTCACATGCTAAATGGCCTTCCCCACAAATATGGCACTATCATTAATGCCATACGTTACAAGACCCCTTTCCCTTCTTTCATGAATGCCCGCTCTATGCTTCTTCTCGAAGAAAAACGCCTCGATGAAGAGTCTCACCACACCACCAACCTTGCTACGCCTTCTTCCCCAACTGTCTTATATGCTGCTCAGTCCACTAATACCTCTTCTAGCAAACCATACAAGGGTAAAAACAAACACTACAACAACAAGGGGAACAAGGGTAAAAACAATGGCTTCAAGCAAACCGCTTCCGCTGCTATCCCTACTCAATCAACATTATATTTTTCTCCGCCTTCATGGGCCTGCTATCCCAATTGGATGATGCCTCGTGCTCCTGCTCTTCCTCAATGGCCTGCACCAACTCAATGGACTTCTGGACAAGGTATTCTCGGTCCTGCACCACGTCCTCCTGCTGCCAATCTTGTCCAAGCTTGCTCTTCTGCGCCTATTAGTTCTGTTCCGTCCGCTACTTCACATCAACCAACGACGGATTTTCTCGGTGCCTTCAACACTATGACTCTTCAAGAGCCCCAAGATGCATCATGGTACATGGATTCTGGCGCTACGGCTCATCTCACCAACTCCCCTGACACAGAAGCAAATTCTCAGATGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_372216.p1 GENE.S_Transcript_372216~~S_Transcript_372216.p1 ORF type:complete len:377 (+),score=54.77,UBN2|PF14223.2|1.4e-17,UBN2_3|PF14244.2|3.5e-14,UBN2_2|PF14227.2|6.7e-10,Retrotrans_gag|PF03732.13|1.8e+03,Retrotrans_gag|PF03732.13|3.4e-08 S_Transcript_372216:105-1235(+)
MATKPTPPAFAVSNIKTYISITLDLTDPDYETWKELFETHATTFDVLGHLDGTSKPTSDTDTEWKRLYSLVKTWLYGTISSSLFRMVVTGKKPTAHHIWTNIESVFRDNKEARAVALEHEFRTLKLGDMSANAYCHRLKTLADMLAGVDAPVSDKTLVTHMLNGLPHKYGTIINAIRYKTPFPSFMNARSMLLLEEKRLDEESHHTTNLATPSSPTVLYAAQSTNTSSSKPYKGKNKHYNNKGNKGKNNGFKQTASAAIPTQSTLYFSPPSWACYPNWMMPRAPALPQWPAPTQWTSGQGILGPAPRPPAANLVQACSSAPISSVPSATSHQPTTDFLGAFNTMTLQEPQDASWYMDSGATAHLTNSPDTEANSQM*

Click here to download the sequence:
Link to NCBI Protein BLAST