Transcript Information: S_Transcript_372222.p1


Annotated TAIR IDAT3G53230.1
Annotated Gene NameATPase, AAA-type, CDC48 protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:19723416-19726489 | Forward length=815
E-Value4E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.59581346048911
Replicate 21.1525337828552
Replicate 30.55052943533136
Condition 2: 8 Hour
Replicate 10.1591447038592
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 21.0147975332693
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_372222.p1 GENE.S_Transcript_372222~~S_Transcript_372222.p1 ORF type:5prime_partial len:134 (+),score=15.97,Vps4_C|PF09336.6|1.7e-07 S_Transcript_372222:3-404(+)
ACCGAGATCTGCCAGCGCGCGGCCAAGGCTGCGATCCGGGAGAGCATCGAGAAGGACATCGAGAAGGAGCGCGCCAAGGCGGCAGACCCCAACGCGATGGAGACAGAGGGCACTGGCGCAGAGGAGGATGATAAGGACAATGTGCCCTGCATCACCCGTGGCCACTTTGAGGAGGCGATGAAGCACGCGCGGCGCAGCGTGTCGCAGGCTGATCTGCGGCGCTACGAAGCGTTTGCCAACACGCTGCGGCAAAGCCGGGGCATGGGCAGTGAGTTTCGCTTCCAAGACAACCCTGCTGCCGCTGGCGGCGGCGGTGGCGGCGGCGGCGGCACAAATGGGGCAGCAGCGCCTGCGGCGTTTGGGGCTGACAACGGAGACGATGATGAAGATCTGTACAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_372222.p1 GENE.S_Transcript_372222~~S_Transcript_372222.p1 ORF type:5prime_partial len:134 (+),score=15.97,Vps4_C|PF09336.6|1.7e-07 S_Transcript_372222:3-404(+)
TEICQRAAKAAIRESIEKDIEKERAKAADPNAMETEGTGAEEDDKDNVPCITRGHFEEAMKHARRSVSQADLRRYEAFANTLRQSRGMGSEFRFQDNPAAAGGGGGGGGGTNGAAAPAAFGADNGDDDEDLYS*

Click here to download the sequence:
Link to NCBI Protein BLAST