Transcript Information: S_Transcript_372975.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.42840368072844
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.21720241397793
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.22003700559561
Replicate 30.7346226525762


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_372975.p1 GENE.S_Transcript_372975~~S_Transcript_372975.p1 ORF type:complete len:103 (+),score=12.13 S_Transcript_372975:113-421(+)
ATGGGTCATAGCTTCCCTCCGGCTGCACCCAATGTCACCAATCTTGTGACAACACTCGTCGAAGATTTTCTTTCTTGGCGAATACAGTTTACGGCTTTCTTGGTCTCCCATGGTCTTTTGGGATATGTCGATGGTTCCATTCCTCGTCCTCTCGAGTACTACCCTGATGCTCGAGGTATTCCTCGCTTCAATCCTGAATATCAATCTTGGGTTCGTGTTGATCAAAGTATTCGCTGCTGGTTATATGCTACTTTGTCCAAAGAATTATTTGTCGAGTTTCATGATGTCAATCACTCCTTTGATATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_372975.p1 GENE.S_Transcript_372975~~S_Transcript_372975.p1 ORF type:complete len:103 (+),score=12.13 S_Transcript_372975:113-421(+)
MGHSFPPAAPNVTNLVTTLVEDFLSWRIQFTAFLVSHGLLGYVDGSIPRPLEYYPDARGIPRFNPEYQSWVRVDQSIRCWLYATLSKELFVEFHDVNHSFDI*

Click here to download the sequence:
Link to NCBI Protein BLAST