Transcript Information: S_Transcript_373779.p1


Annotated TAIR IDAT1G55540.2
Annotated Gene NameNuclear pore complex protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:20734759-20743049 | Reverse length=1819
E-Value9E-67
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.08156285808
Replicate 21.3857170781198
Replicate 31.3173382916857
Condition 2: 8 Hour
Replicate 11.6020305533807
Replicate 21.7632984149538
Replicate 31.8113220255464
Condition 3: 24 Hour
Replicate 11.8831796112581
Replicate 22.1491545460329
Replicate 31.149280348509


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_373779.p1 GENE.S_Transcript_373779~~S_Transcript_373779.p1 ORF type:internal len:812 (-),score=169.93 S_Transcript_373779:1-2433(-)
AACATTTGCGGGTACGGAAACGGGGATGGGGAAACGGCAAAGTCCAAAAATCAAGAAACGGAAAGTGGGGATGACAACCTGGTTCTTGGGATATGCGTGGATAAAACTTCAGTTTATGAAAATGTAAATGTCAAGATTGGAGAAGAGCAAAGAGAACTGCCACCACATTGCATTCTTGTATGTCTGACACTTGAGGGGAAGCTCATTATGTTTAATTTTGCAAGTATTGCAGGAATTAAGAGCTCAAGTCTGGCTTTATCTGCCCCTTCCGATGATGCACAAAGTAATACTGTGGTTGTAACGTCAGATCTGGGAGGAGCTCCTTCACTATTGGAGGAGGATAGCAAAAAACAATCTGCTATACAGTTAGGGTCATGTAATATAGATGAAAGAAAAGTTGGGTTTGGAATTGGTGGAGCTTCTGTTAAACAGGATCTGAAGCCACCTGACTTGCATGAAGGTTCTACCAATGCTAATAATTCTTATGTAAACTTGAGAAAGGAGCCAGAGAAACCTCCGGTGGATGTCAAGACTTGTAAGCCTTTAGATTTAGGGCATTCTCTTCAGGAAACTTCTAACCAGCTCATGACGACTATTTTACATGTGAGAGGCTCTAATACTGTTCTCGGAGATTGCATTGAGACTGAAAGGTGGAAGGCTGAGCGTCATATATCCATAACTGATCAATCTCCAGGGACAATAATGCCTAAGACTGGAAATAGCATAGTAAAAGAGATGGAACCTGGTGTCTCACAGAGCACTAAATACCTTGTGGGTTTGGATAGTTCTTCAGCAATACCAGGTTTCTCTAGTGCGAGGAATACATATTTGTCAAAAAGTACCACAAAAAGCACCATATCTGGGAGTGTGACAAGCTCTCCTGGGAACTCTAGCTATCCATTAGACTCATTTACTTCTTCAACTGGAAGGGGTGTCATACACAGTCAGAAAGCTGAAACCGGGAGTGGTGTCACTGGAATATCACATGGTATATCTAGCTCATTAACGCAGTCTCAAAAAGGTGTGGCATCAGACAACTCTACTGGTCAAAGTCATCCAGCGACGGCGAACTATAAAAACATTTCTTTTTCTCAGCAGCTGAACTCTGAACAAAAAATGTCAAAGGATCTCTGCAATGTACAAAACATGACAGATGAGTTGGACAGACTTCTGGAATGTATAGAGAAAGCAGGAGGTTTCAGGGATGCCTGCACTACTACTCATATAAGCTTGCTAGAAACATTAGAGGAGGCCATGGATAGTCTATCTGAGAAAAGCAGAATGTGGCAGATTCTTACAGAGGAGCAACATAGGGAGATGCAAGTCCTCCTCGATAGAACTGTGCAAGTTTTGGTGAGGAAAACACACATTGAAGGCATTATTAGGCAAAGTACTGACGGGAAATTTTGGGGCTTGTGGAATTGCCGAAAGTTGAGTTCTGAACTAGATCTGAAGAGGCAGAGTGTATCAAATTTAAGTCAGGATCTGGTCAACCAGATGATTGAACTGGAAAAGCATTTCAATGCCCTTGAGCTTAACCTATTTGGCAAAAGCAGTGGTAATGACGTTTCTCAAGCCCTCAAGTGTAAATTTACTCCATCAAGGTACATTCAATCATTACATGCTATTCACAAGGCAATGGTATCACAACTAGCTGCTTCGCAGCAGCTCTCTGAATATTTGTCCAGACAAATGGCTGTCCTGGGCATAAAATTATCTCCGGAAAAACAAGATAATGTCAAAAAGCAATTGTTTGAGTCAATTGGAATATCTGATCACAGTGACTATCCTGGTTTCCCAAAAACAGGAAAGGTGATCAACTCCTCATCAAACAAAAAACTATTTGTTTCCAGCTCAGATAAAGCGCATAATGAGTCCAGGAGGAATCAATTAACTAGTTTGAGTTATCATGATCCTGAAACTGCAAGGAGAAGGAGAGATTCACTTGCTCGGAACTGGGCAAACTTTGAGGCTCCTAAAACAACAGTCAAAAGGATGCTGGTAGAAAATCAACATCAGAATGTGAGTGCTTCATTCTCTTCATTGGACAAGCAACTTAGCAGCCCACGCAAGCTAGAACCTGCAACATCTTCATATCCAAAGGCTCTTCCTGTGCGAAATAGGAGCGGATGCATGGATGTCCTGAAGAAACTCAATTCCGAAGATATGGCATCTTCCATATTCAAATGGGCTGGAGAAATCCCTGAAGTGTCACGAGTTCAAACTGAGGAAACTTCTAGACTGCAAGCTTTACAAGGAAGCAACTATTCAGCAATCCAAAACTCAGCTACTTTGACATCAGACTTATCATCACGGTCATCATCACCAACATTATTGGATCTGAATATAAAGAAGGAAAATAATCACTCCTCTGCTGGTGTACCATGGACTGAGAGAGGACATGGTGATAAGTCCAAATCAGCTATAATTAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_373779.p1 GENE.S_Transcript_373779~~S_Transcript_373779.p1 ORF type:internal len:812 (-),score=169.93 S_Transcript_373779:1-2433(-)
NICGYGNGDGETAKSKNQETESGDDNLVLGICVDKTSVYENVNVKIGEEQRELPPHCILVCLTLEGKLIMFNFASIAGIKSSSLALSAPSDDAQSNTVVVTSDLGGAPSLLEEDSKKQSAIQLGSCNIDERKVGFGIGGASVKQDLKPPDLHEGSTNANNSYVNLRKEPEKPPVDVKTCKPLDLGHSLQETSNQLMTTILHVRGSNTVLGDCIETERWKAERHISITDQSPGTIMPKTGNSIVKEMEPGVSQSTKYLVGLDSSSAIPGFSSARNTYLSKSTTKSTISGSVTSSPGNSSYPLDSFTSSTGRGVIHSQKAETGSGVTGISHGISSSLTQSQKGVASDNSTGQSHPATANYKNISFSQQLNSEQKMSKDLCNVQNMTDELDRLLECIEKAGGFRDACTTTHISLLETLEEAMDSLSEKSRMWQILTEEQHREMQVLLDRTVQVLVRKTHIEGIIRQSTDGKFWGLWNCRKLSSELDLKRQSVSNLSQDLVNQMIELEKHFNALELNLFGKSSGNDVSQALKCKFTPSRYIQSLHAIHKAMVSQLAASQQLSEYLSRQMAVLGIKLSPEKQDNVKKQLFESIGISDHSDYPGFPKTGKVINSSSNKKLFVSSSDKAHNESRRNQLTSLSYHDPETARRRRDSLARNWANFEAPKTTVKRMLVENQHQNVSASFSSLDKQLSSPRKLEPATSSYPKALPVRNRSGCMDVLKKLNSEDMASSIFKWAGEIPEVSRVQTEETSRLQALQGSNYSAIQNSATLTSDLSSRSSSPTLLDLNIKKENNHSSAGVPWTERGHGDKSKSAIIK

Click here to download the sequence:
Link to NCBI Protein BLAST