Transcript Information: S_Transcript_374092.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value8E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.49435915607146
Replicate 20.34152925011633
Replicate 30.39968777890156
Condition 2: 8 Hour
Replicate 10.26409152095521
Replicate 20.90041496073203
Replicate 30.39596001742999
Condition 3: 24 Hour
Replicate 10.54104974589707
Replicate 20.35083299653789
Replicate 30.078086824783641


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_374092.p1 GENE.S_Transcript_374092~~S_Transcript_374092.p1 ORF type:3prime_partial len:323 (+),score=76.04,UBN2_3|PF14244.2|3.1e-29,Retrotrans_gag|PF03732.13|1.4e-08,UBN2|PF14223.2|0.0026,UBN2|PF14223.2|13 S_Transcript_374092:496-1461(+)
ATGGAGATAGCCCTGGCCACAAAGAGAAAATTAGCCTTTGTAACTGGAGTGGTAACTAGGCCTATACCAGTTAGTGCCAAGCAAGATGCTTGGGACACATGTAACAATATTGTGATTGCCTGGATTCTAAACAATGTGAGCGATTCTATTAAGAGATCTATCATGCACATGGAGTCTGCTAGGGCCATTTGGAGCAATCTGTGTACAAGGTTTACAGTGAGTAATGAGTCAAGAAAATACAAGCTGAACAAGGATACTTATGAGATTAGACAGAATGGTAGGTCAATCTCTGAGTATTACACTGAGCTACAGGTGGTCTGGGACGAACTAGAGTGCTTGAATGACTACCCTCCTGTTCTAAATCTCACTGCAGAGATTTCAGCTTATGTAAGGGCTATTGACAATCAAAAGGAGGAACTCAGACTATTTCAGTTCTTCAATGGACTGGATTCCAAGTATGGAATATTGAGGAGTAATATTCTGATGATGGACCCTTTACCTGGAGTTGATGCTGCTGTTGGAATGTTACAGCAAGAAGAGGGTCAAGACGAGTTGCTTGTTGATGTTAAGGAAGAAGGGGGACCCTCAGCTTTCTTTAGCAGAGGTGATAACGCACAGGTTCTTACTTGTACAGCCTGTGGGATGAAGGGTCATGTAAAGGAGAAGTGTTGGACTGTGATAGGGTATCCACCTTGGCATCCCAAGGGTAAGAAAGGGAACTCTAACTACAAGGGTCAATCTGGAGATCCAACAAGGCCATACAATCTAAACCAAGGGAAAGGAAAACCTTACCAAAAGTCTTATTCCCCTGGCTCTAAGAAGGTGGCAGCAAGTGCACAAAAGCATAGTGAAGAGTTGAATGCAGTAATAGCAATGCTTGGCAATCTCATGAAGTTGACAAATCCTGGTAGCTCAGCACAGAAAGGAGGAACTGAGACAGATGAGGAGATAGACAACCAGTTTGCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_374092.p1 GENE.S_Transcript_374092~~S_Transcript_374092.p1 ORF type:3prime_partial len:323 (+),score=76.04,UBN2_3|PF14244.2|3.1e-29,Retrotrans_gag|PF03732.13|1.4e-08,UBN2|PF14223.2|0.0026,UBN2|PF14223.2|13 S_Transcript_374092:496-1461(+)
MEIALATKRKLAFVTGVVTRPIPVSAKQDAWDTCNNIVIAWILNNVSDSIKRSIMHMESARAIWSNLCTRFTVSNESRKYKLNKDTYEIRQNGRSISEYYTELQVVWDELECLNDYPPVLNLTAEISAYVRAIDNQKEELRLFQFFNGLDSKYGILRSNILMMDPLPGVDAAVGMLQQEEGQDELLVDVKEEGGPSAFFSRGDNAQVLTCTACGMKGHVKEKCWTVIGYPPWHPKGKKGNSNYKGQSGDPTRPYNLNQGKGKPYQKSYSPGSKKVAASAQKHSEELNAVIAMLGNLMKLTNPGSSAQKGGTETDEEIDNQFA

Click here to download the sequence:
Link to NCBI Protein BLAST