Transcript Information: S_Transcript_374097.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.14951124289427
Replicate 20.24789651188219
Replicate 30.31083263062248
Condition 2: 8 Hour
Replicate 10.2396111271588
Replicate 20.25136908583962
Replicate 30.35925585851092
Condition 3: 24 Hour
Replicate 10.8590684518773
Replicate 20.89127348895748
Replicate 30.85018127208256


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_374097.p1 GENE.S_Transcript_374097~~S_Transcript_374097.p1 ORF type:complete len:178 (+),score=36.29,UBN2_3|PF14244.2|6.3e-36,Retrotrans_gag|PF03732.13|3.3e-08 S_Transcript_374097:70-534(+)
ATGGAGATAGCCTTGGCAACAAAAAGAAAACTTGGTTTTGTTACTGGTCTTGTGAGTAGGCCTGTGACAGTGACTAAAAAACCAGAAGCTTGGGATGCTTGCAACAACATTGTCATTGCTTGGATCCTTAACAATGTCAATGATTCTATCAAAAGGTCCATTATGTATATGGATTCAGCCAAGAACATTTGGAACAATCTGTGCACTAGGTTCACTGTGAGTAATGGTTCAAGGAAATACAAACTTAACAAGGATACTTATGAAATTAAGCAAAATGGTAGAACCATCTCAGAGTATTATACTGAGCTGCAGGTTGTGTGGGAAGAGTTGGAGGCCTTGAATGATTATCCATCTATTCTAAATATGACAGCTGAGATTATGACTTACATAAAGGCTATTGAAAGACAGAAGGAAGAAATGAGGCACATAACAGGGCTGGAAATAAGGCACATGACAGGACTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_374097.p1 GENE.S_Transcript_374097~~S_Transcript_374097.p1 ORF type:complete len:178 (+),score=36.29,UBN2_3|PF14244.2|6.3e-36,Retrotrans_gag|PF03732.13|3.3e-08 S_Transcript_374097:70-534(+)
MEIALATKRKLGFVTGLVSRPVTVTKKPEAWDACNNIVIAWILNNVNDSIKRSIMYMDSAKNIWNNLCTRFTVSNGSRKYKLNKDTYEIKQNGRTISEYYTELQVVWEELEALNDYPSILNMTAEIMTYIKAIERQKEEMRHITGLEIRHMTGL*

Click here to download the sequence:
Link to NCBI Protein BLAST