Transcript Information: S_Transcript_374098.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.15078187668658
Replicate 20.31250410138123
Replicate 30.10449142256997
Condition 2: 8 Hour
Replicate 10.54370683528101
Replicate 20.1901290252668
Replicate 30.24153934963152
Condition 3: 24 Hour
Replicate 10.43318465845371
Replicate 20.70623775450374
Replicate 30.21435165216812


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_374098.p1 GENE.S_Transcript_374098~~S_Transcript_374098.p1 ORF type:complete len:353 (+),score=85.16,UBN2_3|PF14244.2|4.1e-35,Retrotrans_gag|PF03732.13|3.2e-08,UBN2|PF14223.2|0.00045,UBN2|PF14223.2|3.3 S_Transcript_374098:70-1059(+)
ATGGAGATAGCCTTGGCAACAAAAAGAAAACTTGGTTTTGTTACTGGTCTTGTGAGTAGGCCTGTGACAGTGACTAAAAAACCAGAAGCTTGGGATGCTTGCAACAACATTGTCATTGCTTGGATCCTTAACAATGTCAATGATTCTATCAAAAGGTCCATTATGTATATGGATTCAGCCAAGAACATTTGGAACAATCTGTGCACTAGGTTCACTGTGAGTAATGGTTCAAGGAAATACAAACTTAACAAGGATACTTATGAAATTAAGCAAAATGGTAGAACCATCTCAGAGTATTATACTGAGCTGCAGGTTGTGTGGGAAGAGTTGGAGGCCTTGAATGATTATCCATCTATTCTAAATATGACAGCTGAGATTATGACTTACATAAAAGCTATTGAAAGTCAGAAGGAAGAAATGAGGCTGTTTCAGTTCCTAAATGGCCTGGATTCTAAATATGGAGTCATGAGGAGCAATATTCTTATAATGGATCCACTGCCTGGAGTGGAGGCTGCTGTAGGGATCTTACAACAAGAGGAAGGACAAGATGAGATGTTGGTAGAAGCAAAAGAGGAAAAGGAAGCTTCAGCCTTCTTCAGTAAAGGGGAAAACATTCTCTCTGTTACTTGTAGTGCTTGTGGTGTGAAGGGGCACACAAAAGAAAAATGTTGGACTATTGTGGGTTATCCACCTTGGCATCCCAAAGGAAAGAAAGGGAATACAACTCCGAGAGGTCAGTCTGCTGGACCAAGTAGACCACAATACATACAACAAGGCAGGGGTAGGTTTCATCAGAAACCTTACTCTCCTCCTCCTAAGAAGATTGCAGCCAATGCTCAGAAGCACAGTGATGAGTTGAATGCAGCCATAACCATGCTGGGTAACTTATTCAAGCTTGCACAACCAGCCCACTCAGGACAAAAATCTGGAATTGAGACTGATGAAGAGCTGGACACTCACTGTGCAGGATTGCATAACCAAGAATATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_374098.p1 GENE.S_Transcript_374098~~S_Transcript_374098.p1 ORF type:complete len:353 (+),score=85.16,UBN2_3|PF14244.2|4.1e-35,Retrotrans_gag|PF03732.13|3.2e-08,UBN2|PF14223.2|0.00045,UBN2|PF14223.2|3.3 S_Transcript_374098:70-1059(+)
MEIALATKRKLGFVTGLVSRPVTVTKKPEAWDACNNIVIAWILNNVNDSIKRSIMYMDSAKNIWNNLCTRFTVSNGSRKYKLNKDTYEIKQNGRTISEYYTELQVVWEELEALNDYPSILNMTAEIMTYIKAIESQKEEMRLFQFLNGLDSKYGVMRSNILIMDPLPGVEAAVGILQQEEGQDEMLVEAKEEKEASAFFSKGENILSVTCSACGVKGHTKEKCWTIVGYPPWHPKGKKGNTTPRGQSAGPSRPQYIQQGRGRFHQKPYSPPPKKIAANAQKHSDELNAAITMLGNLFKLAQPAHSGQKSGIETDEELDTHCAGLHNQEY*

Click here to download the sequence:
Link to NCBI Protein BLAST