Transcript Information: S_Transcript_374856.p1


Annotated TAIR IDAT3G14040.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4648607-4650226 | Reverse length=445
E-Value4.6E-152
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.36962501715528
Replicate 20.91928289822978
Replicate 31.1270560939978
Condition 2: 8 Hour
Replicate 10.65160914857906
Replicate 20.87001633598937
Replicate 31.0065816924574
Condition 3: 24 Hour
Replicate 10.54612208726485
Replicate 20.6295503215652
Replicate 30.42036740675194


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_374856.p1 GENE.S_Transcript_374856~~S_Transcript_374856.p1 ORF type:complete len:360 (+),score=65.78,Glyco_hydro_28|PF00295.13|3.6e-99,Beta_helix|PF13229.2|1.5e-06,Pectate_lyase_3|PF12708.3|0.00012,Pectate_lyase_3|PF12708.3|8.1e+02 S_Transcript_374856:209-1288(+)
ATGGGTGCTTGGAAAGAAGCCTGTGCAGCAACAAGTCCTGCTAAGATTGTAGTCCCAGGAGGAACATTCTTGTTAGAACCTGTGAAGCTCATGGGTCCTTGTAAGTCCCCAGTTACAATCGAAATTTCAGGCAACTTCAAAGCCCCTCCAAACCCGGCCCAATTCAAAGGCGAAGACACCTGGGTTAAACTTGAGAACATTCAGGGCTTGACCATCACTGCACTCAAGGGGGGTGGAGTTTTTGATGGCCAAGGTGAGATGGCTTGGAAGCAAAATGATTGTGCTAAGAGCGGCTCATGCAATAACCTCCCTTATAATTTTAGGTTCAACATGCTGACCAACTCAGAGGTCCGTGGGATAAGCTCAGTGAACAGCAAGTTGTATCATATGGGAGTTTTGGGGTGCAAAAATTTTACATTAAAAGATATAACTATCACTGCTCCTAAAGACAGTCTTAACACAGATGGTATCCACATTGGAAGATCAGACGGGGTCACTGTAAGTCATGCTAAGATTGGTACAGGTGATGACTGTGTTTCACTAGGTGATGGCGCCAAGCAGGTCACCGTTGAAGGAGTCACCTGTGGTCCTGGCCATGGTATCAGCATTGGAAGCCTTGGAAGGTACCCGAATGAGGAACCTGTCTCCGGAGTTACCATCAAGAACTGCACTATCAGTGACACTGACAATGGCGTCAGGGTCAAGTCTTGGCTGAATTCATATGCCATGACTGCCTCAGACTTGCACTTTGAGGACATTACTGTCAACAATGTCCTTAACCCTATCATTGTTGATCAGGAATACTGCCCCTACAACCATTGCAAAGCTAAGACACCATCAAAGGTGAAGCTGAGCAAAATGAGCTTCAAAAACATAAAAGGAACAGCGGGAAGCCGAGAGGCAGTGAAGCTGATATGCAGCAGTGGAGCACCCTGTGACCAGGTGGAGCTTGCTGACATCGACTTGTCATTCAGTGGTGGGGCAGCTGTCTCACAGTGTAAGAACGTGAAGCCAATAACATCAGGCAAGCAGAATCCAGTAGCTTGTGGTGCACCTGCCCCTGGCGCGAGAAGAAGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_374856.p1 GENE.S_Transcript_374856~~S_Transcript_374856.p1 ORF type:complete len:360 (+),score=65.78,Glyco_hydro_28|PF00295.13|3.6e-99,Beta_helix|PF13229.2|1.5e-06,Pectate_lyase_3|PF12708.3|0.00012,Pectate_lyase_3|PF12708.3|8.1e+02 S_Transcript_374856:209-1288(+)
MGAWKEACAATSPAKIVVPGGTFLLEPVKLMGPCKSPVTIEISGNFKAPPNPAQFKGEDTWVKLENIQGLTITALKGGGVFDGQGEMAWKQNDCAKSGSCNNLPYNFRFNMLTNSEVRGISSVNSKLYHMGVLGCKNFTLKDITITAPKDSLNTDGIHIGRSDGVTVSHAKIGTGDDCVSLGDGAKQVTVEGVTCGPGHGISIGSLGRYPNEEPVSGVTIKNCTISDTDNGVRVKSWLNSYAMTASDLHFEDITVNNVLNPIIVDQEYCPYNHCKAKTPSKVKLSKMSFKNIKGTAGSREAVKLICSSGAPCDQVELADIDLSFSGGAAVSQCKNVKPITSGKQNPVACGAPAPGARRR*

Click here to download the sequence:
Link to NCBI Protein BLAST