Transcript Information: S_Transcript_3789.p1


Annotated TAIR IDAT4G30790.1
Annotated Gene NameINVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:14993383-14997785 | Reverse length=1148
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.017292374851
Replicate 218.761763562857
Replicate 319.689920265078
Condition 2: 8 Hour
Replicate 119.216285780274
Replicate 220.480737173985
Replicate 320.739256630037
Condition 3: 24 Hour
Replicate 122.177265487915
Replicate 219.349492554616
Replicate 317.376133719501


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_3789.p1 GENE.S_Transcript_3789~~S_Transcript_3789.p1 ORF type:complete len:1183 (+),score=315.01,ATG11|PF10377.5|5.3e+03,ATG11|PF10377.5|7.3e-20,APG17|PF04108.8|0.12,APG17|PF04108.8|1e-06,APG17|PF04108.8|1.1e+02,APG17|PF04108.8|3.6e+02,APG17|PF04108.8|1.7e+02 S_Transcript_3789:223-3549(+)
ATGGCTGGGATTCAATTGAATGACCAGCTTTTACTTTGTGGTGACTTGAAGCTTGAAACTCATGAGCCACTTGGAGCATATAAGCTACCTTCGGATGAGCAAGAAGTGTTTTGTTTCAATAAAGCTAGATTGCAAACCAATGCTGTTCCCCCGGATGCAGAACAAGTTAAAATCCATGACGTTCCTGAACCGCCTTCACCGTTTTCTAACCTGGATCCCCATCCATTGGATAATGCCATGGACCCTGCACTTAAGGCTTTACCTTCTTATGAGCGCCAGTTTCGCTACCATTACCATTGTGGACATGCCATATATAGTCGAACAGTTGGGAAGTTAGATGTCTGTGAGAGGCTTCTGAGGGAGCAGAAGGTGCAAGAAAGGGCATTGGAGATTGCCAGACGGAACTTGGATTATTTCTTTAGGATACTTAATCAAAATTACTTGGATTTTCTTAAATGTTATTCGCAGCAGCACCGTGTACATTCCGATCTGTTGGTCAACTTTGTGAAGGACATTGAAAAGTTAAGATCCTGCAAACTTATCGCAGCTCTTCAGACTCCTTCTCGCAAGTGTTTGTTGGATCTTGTCAAGGAAGAGAACTTGAGGAAATGGTTGGAGAACTGTACTTCTTCTCACAAGCAATTTGAGAACAAGGTCTCTCAATTTAAGCATGTGTTTGGAAAACTGAAACATGATGTTGAAGATCTATTTTCTAGCAAAGCAGCTTTGCCAATCAGGGATCTAGAATTAATGATAAGGGAACATTATCAACACATCAATGAACAAAGGAGTATTATGCAGTCTTTAAGCAAGGATGTCAGTACCGTGAAAAAATTGGTGGATGATTGTCTGGCTAGTCAGTTGTCCTCTTCTCTCCGTCCTCATGATGCAGTTTCTGCCTTGGGGCCTATGTATGATGTCCATGACAAAAATCACCTGCCAAAGATGAGGGCATGTGACAATTCAATTTCTGATCTGCTTGAGTTTTGTGCAAACAAGAAGGATGAAATGAATATTTTTGTGCACAGTTACATGCAAAAGATAGCTTATATTCAGCATAACATCAAGGATGTTCGTTTACAATTTAATGCCTTTTCCGAGGCAATAAAACGACAGGATGCTGTATTCGAGGGCTTGAAAGTGGTCCATGGTGTTGGCCCTGCTTACAGAGCCTGTCTTGCAGAAACAGTGCGAAGAAAGGCTTCTATGAAGCTTTACATGGGCATGGCTGGACAGTTGGCGGAGAAACTTGCTGCAAAGAGAGAAGATGAGGTGAGGAGACGAGAAGAATTTTTGAAGGCGCAGAGCGCATATATACCCAGGGATATGTTAGCTTCCATGGGATTGTTTGATACTCCTAGCCAATGTGATGTCAACATTGTTCCTTTTGATAATAGCTTACTTAATATTGACATTGGTGATATTGATCGTTATGCTCCCGAGTCTTTGGTTGGACTACCATTTAGGAGTGAGAAGCAAGGAACTTCAAGGACCTTGCTTTCCTCATCTGACAATCGTTCTCATTCATCAGATCTTGAGCTGAATGTGGTTGGCCCTGAAAAGGGCGAGTCCTTGGATCTTGATGAGTGTGACTTGGTAGATATTGCTGGAACTAGTAAACTTGAGGTTGAAAATGCTAAACTGAGAGCTGAACTTGCTTCAGCAATTGCACTAATTTGTTCCTTCAGTCCTGAAGTGGAATATGGATCACTTGATGATAGCAAGCTTGATAATTTGCTAAAATGTGCCGCTGAGAAAACAGCTGAAGCCTTGCAACAGAAGGATGAATTCGTAAAACATCTTGAATCGATGTTGAAGGCTAAACATTTGCAGTGTCAATCATATGAAAAGCGAATCGAAGAACTGGCTCAGCAATTATCTGACCAATACATGCGAGCACAGAAGTGTTTTGGCAATAATGATGCTTCCTACTCCATGAAGCCTGATGATAGCAGGTCAGAAATTTCAGATCATGGGGAAGGACAGTTGCCTTGCAGGCCCAGTGAACTCATGGATGATATTTCTTGTACATCTGATCCAGTAGATGCTAAAGATGGGCTTTTGCCTAGGCTTTCTGGAAAAGCTCAGGAAGGAGTTGATGACAATATGACCGACTCTTCTGGGATGCTGAATCCTCATTTGGACTCCTCTATGGTGGACCCACAACGTGAGGATCAGCAGCTTGAAGACAAAGGTGAGGACAAGATGGAAGGTCAATTAAGCTCAATGCCATCATATGATGCTGCTAGAGGTCATGTCATACCTTCTGAAGCTCCTACTGACCCAAGTCCAGGTAGTAAAGTTGATCCAAATCTTGTACTGGAACTGCAAAGTGCACTTGAAGATAAGGAAGGCCAGTTGACAGATTCTGAAAGTCGGCTTAAATCTGCATTGGAGGAGGTTGCCAAGCTTGGGTTGGAGTTGGACAATAGCAGAAAACTTTTGGATGAATCACAGATGAATTGTGCTCATCTAGAGAACTGCCTGCATGAAGCTAGGCAAGAGGCCCAAACTCATCTTTGTGCTGCTGATAGGAGAGCTTCAGAGTACAACAATCTGCGAGCATCTGCTGTGAAGATGCGTGGCCTTTTTGAAAGACTCCGCACTTGTGTCAATGCTTCTGGGGGAGTTGCTGCTTTTGCTGAGTCACTGCGTTCTCTAGCTCAATCTTTATCCAGTGCTGCAAGTGACAGTGAAGATGAAGGTACTGCTGAGTTCCGTGCATGTATCAGGGTCCTTGCTGAAAAGGTTTGCTTATTGTCAAGGCAACGTGCTGAGCTCCTCGATAGGTATTCAAAGGCTGAAGCTGCAAACAAACACCTTACAAAGGAGTTGGAAGAGAGAAAAGAATTGGTTAAAACATTGTACACGAAGCATCAACTTGAGAAGCAGGCAAATAAAGAGAAGATCTCTTTCTGCCGCTTTGAAGTCCATGAGATAGCAGCCTTTGCGCTTAATTCATCAGGACACTATGAGGCAATAAGCCGGAACTGCCCCAATTACTACCTCTCTGCAGAATCTGTGGCCTTGTTCACCGAGAATCTCCCTAGCCGACCCTCCTACATTATTGGACAGATTGTCCATATTGAGAGACGGGTTGTGAAGCCGCTTCCTGGTGCAACAATTAGGCCCGATCATAATCGGGGAGGAGGAGATCAAGTAGATAGCTCATCATCATCGGACAGTATAAGCACACGGTTGACCTTGAATCCAGGAATCGGATCAGCATCGAACCCATTTGGTCTGCCCGTTGGATGTGAATACTTCATAGTCACAGTTGCAATGCTACCTGATACCGCAATTCATTCGCCATTAAAATTCAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_3789.p1 GENE.S_Transcript_3789~~S_Transcript_3789.p1 ORF type:complete len:1183 (+),score=315.01,ATG11|PF10377.5|5.3e+03,ATG11|PF10377.5|7.3e-20,APG17|PF04108.8|0.12,APG17|PF04108.8|1e-06,APG17|PF04108.8|1.1e+02,APG17|PF04108.8|3.6e+02,APG17|PF04108.8|1.7e+02 S_Transcript_3789:223-3549(+)
MAGIQLNDQLLLCGDLKLETHEPLGAYKLPSDEQEVFCFNKARLQTNAVPPDAEQVKIHDVPEPPSPFSNLDPHPLDNAMDPALKALPSYERQFRYHYHCGHAIYSRTVGKLDVCERLLREQKVQERALEIARRNLDYFFRILNQNYLDFLKCYSQQHRVHSDLLVNFVKDIEKLRSCKLIAALQTPSRKCLLDLVKEENLRKWLENCTSSHKQFENKVSQFKHVFGKLKHDVEDLFSSKAALPIRDLELMIREHYQHINEQRSIMQSLSKDVSTVKKLVDDCLASQLSSSLRPHDAVSALGPMYDVHDKNHLPKMRACDNSISDLLEFCANKKDEMNIFVHSYMQKIAYIQHNIKDVRLQFNAFSEAIKRQDAVFEGLKVVHGVGPAYRACLAETVRRKASMKLYMGMAGQLAEKLAAKREDEVRRREEFLKAQSAYIPRDMLASMGLFDTPSQCDVNIVPFDNSLLNIDIGDIDRYAPESLVGLPFRSEKQGTSRTLLSSSDNRSHSSDLELNVVGPEKGESLDLDECDLVDIAGTSKLEVENAKLRAELASAIALICSFSPEVEYGSLDDSKLDNLLKCAAEKTAEALQQKDEFVKHLESMLKAKHLQCQSYEKRIEELAQQLSDQYMRAQKCFGNNDASYSMKPDDSRSEISDHGEGQLPCRPSELMDDISCTSDPVDAKDGLLPRLSGKAQEGVDDNMTDSSGMLNPHLDSSMVDPQREDQQLEDKGEDKMEGQLSSMPSYDAARGHVIPSEAPTDPSPGSKVDPNLVLELQSALEDKEGQLTDSESRLKSALEEVAKLGLELDNSRKLLDESQMNCAHLENCLHEARQEAQTHLCAADRRASEYNNLRASAVKMRGLFERLRTCVNASGGVAAFAESLRSLAQSLSSAASDSEDEGTAEFRACIRVLAEKVCLLSRQRAELLDRYSKAEAANKHLTKELEERKELVKTLYTKHQLEKQANKEKISFCRFEVHEIAAFALNSSGHYEAISRNCPNYYLSAESVALFTENLPSRPSYIIGQIVHIERRVVKPLPGATIRPDHNRGGGDQVDSSSSSDSISTRLTLNPGIGSASNPFGLPVGCEYFIVTVAMLPDTAIHSPLKFN*

Click here to download the sequence:
Link to NCBI Protein BLAST