Transcript Information: S_Transcript_379129.p1


Annotated TAIR IDAT3G16890.1
Annotated Gene Namepentatricopeptide (PPR) domain protein 40
Annotated Gene Symbol(s)PPR40
Annotation TypeHomolog
Chromosome Positionchr3:5768401-5770380 | Reverse length=659
E-Value7E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.78795676991124
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.25376009053549
Condition 3: 24 Hour
Replicate 10
Replicate 20.2698072806708
Replicate 30.30026243339424


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_379129.p1 GENE.S_Transcript_379129~~S_Transcript_379129.p1 ORF type:internal len:84 (+),score=14.35,PPR_2|PF13041.2|0.031,PPR_2|PF13041.2|2.9e-15,PPR_3|PF13812.2|14,PPR_3|PF13812.2|5.9e-08,PPR_3|PF13812.2|2,PPR|PF01535.16|2.5,PPR|PF01535.16|4.3e-06,PPR|PF01535.16|0.33,PPR_1|PF12854.3|3.5e+02,PPR_1|PF12854.3|0.0056,PPR_1|PF12854.3|9.4e-06 S_Transcript_379129:1-249(+)
ACCTATGTTGCTATTATTGAAGCATTGTTCAGAGGTGGATATGCTAGACAAGGAAGTCATTATCTGGACCAGATGTTCAAGGCTGGTCTCATATCTAATGTATTCTCATATAATAAGGTAATCGATTGCTTGTTGAAAGCTAAGATGACTGAGAGAGCACTAGCACTGTTGACAGAGATGCAGCAAAGAGGCATCACTCCAAATCTTGCTACTTTTAATACACTAATTGATGGACATTTTAAAGCTGGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_379129.p1 GENE.S_Transcript_379129~~S_Transcript_379129.p1 ORF type:internal len:84 (+),score=14.35,PPR_2|PF13041.2|0.031,PPR_2|PF13041.2|2.9e-15,PPR_3|PF13812.2|14,PPR_3|PF13812.2|5.9e-08,PPR_3|PF13812.2|2,PPR|PF01535.16|2.5,PPR|PF01535.16|4.3e-06,PPR|PF01535.16|0.33,PPR_1|PF12854.3|3.5e+02,PPR_1|PF12854.3|0.0056,PPR_1|PF12854.3|9.4e-06 S_Transcript_379129:1-249(+)
TYVAIIEALFRGGYARQGSHYLDQMFKAGLISNVFSYNKVIDCLLKAKMTERALALLTEMQQRGITPNLATFNTLIDGHFKAG

Click here to download the sequence:
Link to NCBI Protein BLAST