Transcript Information: S_Transcript_380302.p1


Annotated TAIR IDAT4G30150.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14742452-14749764 | Forward length=2009
E-Value1E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.4189137257756
Replicate 30.81708324421015
Condition 2: 8 Hour
Replicate 10.40491247437594
Replicate 20.56637591492979
Replicate 30.40473128363889
Condition 3: 24 Hour
Replicate 10.13825875626958
Replicate 20.28688369083984
Replicate 30.15963319243744


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_380302.p1 GENE.S_Transcript_380302~~S_Transcript_380302.p1 ORF type:internal len:158 (-),score=20.37 S_Transcript_380302:2-472(-)
CAAACTTTAACAGATGACATCTCAGACTCCTTGGCATGGATGAAAGTTAGTTGTTCAGTGACCGATGAACGTGAATTTGGAGATGCCGTGTCTTGTAGATTCACAATTCAAGCAGAACTTCTTGGAATTGTCTTGTCTGAAATTTATTCTATGGTTCTGGATTCTCTTTCAGTCACTCCTGGTAATAGTTACCTTATGGGAGTTTCTATAAGGAACCTGATAATGGTACTACGTGCCAGCATGATCCATCTAGTTACCCCTGAACAAGATGTTGTTGATGAGTTTCTCTTATCTGTCACGGGAATAACTTTTGAAAGGAACAAGGTGAAATGTAAAAATGATTTGCAGGATAAGATTCCCTTGGTTATGTTATACTTCTTTCGTTTATATATGTCCTGCCGGAGCTTATGCCGACAAGCAGTTAGCCTCATGCCTCCAGACTCGTCAAGAAAGATTTCAGGCATGATGGCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_380302.p1 GENE.S_Transcript_380302~~S_Transcript_380302.p1 ORF type:internal len:158 (-),score=20.37 S_Transcript_380302:2-472(-)
QTLTDDISDSLAWMKVSCSVTDEREFGDAVSCRFTIQAELLGIVLSEIYSMVLDSLSVTPGNSYLMGVSIRNLIMVLRASMIHLVTPEQDVVDEFLLSVTGITFERNKVKCKNDLQDKIPLVMLYFFRLYMSCRSLCRQAVSLMPPDSSRKISGMMA

Click here to download the sequence:
Link to NCBI Protein BLAST