Transcript Information: S_Transcript_380796.p1


Annotated TAIR IDAT5G42905.1
Annotated Gene NamePolynucleotidyl transferase, ribonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:17201414-17202323 | Reverse length=258
E-Value1E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.46826395135215
Replicate 20.46907690408206
Replicate 30.32450562023931
Condition 2: 8 Hour
Replicate 10.59410911440693
Replicate 20.62326264538828
Replicate 30.53133344469895
Condition 3: 24 Hour
Replicate 10.57655117717111
Replicate 20.91386337001401
Replicate 30.77663186584668


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_380796.p1 GENE.S_Transcript_380796~~S_Transcript_380796.p1 ORF type:3prime_partial len:1364 (+),score=167.46,RVT_1|PF00078.23|2.8e-41,RVT_3|PF13456.2|3.7e+03,RVT_3|PF13456.2|1.2e-15,zf-RVT|PF13966.2|2.5e-13,Exo_endo_phos|PF03372.19|2.6e-12,Exo_endo_phos|PF03372.19|5.4e+03,Exo_endo_phos_2|PF14529.2|6.3e-06,Exo_endo_phos_2|PF14529.2|2.2e+03 S_Transcript_380796:314-4402(+)
ATGGATAGGTTCCCTAATTTTCTATCATCACACAAGCCAATCAAGTTTCTTGTGTGGAATTGCCAAGGCGCAGCAAATAGAAGTTTTCTACGATGCCTTAGGGAGTTCATTCGCCAGCATGACCCAGCAGTTCTTGTACTGGTTGAGACCTGGATTAGTGGTAATAAAGCCGACGAAGTTTGTAAGGCCATTAATTTCTCCGGTTGCTTTCGAGTTGAGGCACAGGGGTTCAGCGGTGGTATTTGGGTCCTCTGGCGGACCGAGGAAGTTTCTGTCCAACTTCTATCATCTTCATCTCAATATGCTAATGTGCTTATTTCTAGACGACATGAGCCGACATGGATGTTCTCTGCCATATATGGCAGTCCCGTGGAGAATACTCGGGAGCAATTATGGAACGAGCTCATGGACCTTGCTTCTTCTCACTCTTATCCTTGGATGCTAGCTGGAGACTTTAATGCCATTGCTAGTCCGGAGGAGAAGCATGGAGGGGCAAATAATGGCCAACGTCGGTGTGCCCGCTTTGCCCAATGGATAAATGATGTGCAGCTTATTGATCTGGGTTTTTCGGGGCCTCGATTCACCTGGAGTCGGGGTACTAACGAACGGACTCGCGTGCAAGAACGGCTCGATCGGGCGCTCTGTAACTCTCACTGGCGGCATATGTTTCCTGAGGCCACTATCAGACATCTTCCCACCATCAGGTCTGATCATTGCCCCCTGCTGATAAATACACATGGAGGAATCCCAGCAACTCGGGCCCTTCGCCCTTTCAGGTTCCAAGCTGCATGGCTGCTTCATGATGAGTTTGATGGAGTGGTGAGGCGTTCGTGGAATAGTTCAGCTCCTCTGCTCCATGAAATACAGAGGCTTGAGCACACTCTCCAAAACTGGAATGTCACCTCGTTTGGCAATATTTTCAAGAATAAACGAAGACTCTGGGCCCGCTTAGATGGTATCCAACGCGCCCTCGCTGAGGGGTTTAAGCCCCATCTCCTCTCACTGGAGCGACAACTTCACCAGGAGTTAGAAGCAGTGCTCGAGCAAGAGGAAGTGATGGCCTACCAAAAAGCACGGTATGAACGAATTAAATTTGGTGATAGGAATACATCGTTCTTTCATACCATGACCCTTATTCGAAGACGGAAAAACAAGGTGGAGGGCCTCCTAAATGACCAAGATGAGTGGGTTTGGGACCCAGCCCAACTATGTAGTATGGCAGTTGATTTTTACAGGAAACTATACCAGAAGGAGGATACGCCCCATTTGAATGTACTTCCTAAGCTCTGTTTTCCAGTTTTATCTCAGGATGTGTTAGATCCCCTGTTTCAACCTTATTCCCCTGAGGAGATCAAGAAGGCCCTCTTTGACATGGCTCCCCATAAAGCTCCTGGGCCCGATGGATTTCATGCAGTGTTCTTTCAAAAGATGTGGGATGTGGTGGGGATTTCCATATGTGAGTTTGCACTTGAATTCTTCAGGCTCAATCACTTACCCGAAGGAATGAACGACACTCTCTTAGTCCTCATTCCCAAGGTTCCTGACCCCGAAAGACTCACGCAAATGAGACCTATCTCTTTGTGCAACGTGACTTACAAGATACTCACTAAGGTGCTGGCAAATCGTATTAAAGGCATTCTCCCAAAGCTAATATCTCCAACTCAAGCAAGTTTTGTTCCAGGACGACAAATATCGGACAACATTGTGATAACCCAAGAGGTGATTCATGCAATGAAGAGGAGAACAACTGGAGCTGGCTGGATGGCGATAAAAATTGATCTCGAGAAGGCCTATGACCGACTCAAGTGGGAGTTTATCTCTGATACGCTTCTGGAACTCCCTTTTCCAGTAAATATGGTTGGAGCCATTATGGCATCTGTTCAAGGCATGCGAATGCGGCTGCTATGGAATGGTGAAAAGACTGATGCATTTGAGCCCACGAGAGGCATACGCCACGGAGACCCCCTCTCTCCTTATCTCTTTGTCCTCTGCATGGAGCGGTTAGCCCATCGTATTCAAATGGCAGTGGATGACAAGAAATGGAAGACAATTCGCCTCTCACGAAAATCGCCGCCGCTTAGCCATCTTTTCTTTGCTGATGATCTTATTCTTTTTGCCGAAGCCACTCTAGATCAAGCGAATGTAATCCTTAAATGTCTTGAGGATTTTTGTATTTCCTCAGGGCAGAGAGTGAATAAGCAAAAGTCGGCTGTTTATTTTTCTAAAGGAGTGCCGGCACATATGCAACAACTTGTGAGTGAAGATCTGGGTATTCCCAAAACTGATAATTTGGGAAATTATCTTGGTGTTCCAATCCTACATAATAGAGTCGGGAAGAACTCGTACAAGCACATCATTGATAAGGTGAACAAGCGTTTGGCGGGATGGAAGGCGCAACATCTTAGCTTTGCGGGACGACTCACACTGGTGAAATCTGTGACTTCCACCATTCCCAATCATGTGATGCAGACAGTACATCTTCCAGTCTCGGTTTGCAGCCAGCTAGATCAGAAGAATCGCAATTTTTTATGGGGGGATACAGAGGACAAGAAGAAGCCTCATTTAGTCAACTGGGACCAGGTTTGTCGACCAAAATCTGTGGGTGGCCTGGGTATTCGTTCTGCACGACAAGCCAACACTGCTTTGCTCTCAAAACTGGGATGGAGACTATTAAAGGAACCCGAGGCACTTTGGGCACGAGTACTCAAGGCCAAATATGGCGGGGACCGTAGTGGAATAAATATGTTCAAACCGATCGCGGGGGCTTCACCGGCTTGGAGGGGCTTAAATAAGTGTGCTCCAGTTCTACAACAAGGAATGGGGTGGAATGTTACCAATGGCAGCACTGTTCGTTTCTGGCTTGATAATTGGCTGGGTCCAGGTAACCTTCTATCGCAAGCTAAGTGTGAGATTGGTGAAGAAGAACTCCAGAGCAACGTAGCAGACTACTGGGACGAGCCTCAAGGATGGAAATGGGAGGAATTCAGCTCCAAACTCCCTGCCATTACCCTGCTAAAAATCGCAGCCATTCAACTCAGACCGCAGTCCCCTATATCAGATAGTATTGTATGGCAACGAAGTACGAAGGGGTGTTTCTCAACCTCCTCTGCTTTTGATATTTTCAGGCCTAAAGAAAAAGACGTGGTGGATCGCATTTGGAAGAGTATATGGGATGTATCATGCCCAGAAAGGTTCCGCACCTTTGCGTGGCTTGTGGCCCATGATAGGATACTCGCCAATGCTACTCGCTGCTATCGGGTTATGACGGACTCCCCCGCATGCACCTATTGTGATGGCCATTGGGAGGATACTCTCCATGTCTTACGTAACTGTTTTGCAGCCTCGTCCATCTGGAACAAGTTGGTAGTGCCGAGTGCTAGAATGGATTTCTATACTTGGAATCTAAGAGATTGGCTCTATAAGAATTGCACTTCAAACTTGGGGGTTAATTCTTCATGGGATTGGCCGAGAGTCTTCCTAACTACAATGTGGTTCATTTGGAGATGGCGCTGCTACAGATGTTTTGGGGGGCACATGCGCATTCCCTTCAACCAAATTAGCTTCCTGCACAAGCAATTCCAAGAAATTACTAGAGCACTCGATGAGGATGACTGTCATCAAGGACCTCCCAAAGTCTTGACCTTCATTCGTTGGCAGTACCCACTACCCCCGTGGGTGAAACTAAATACAGATGGTGCAGCGAAAGGCAATCCAGGTACGGCAAGTGCAGGAGGGGTCATTAGAGACTCTTTGGGTCAATGGGTTCAAGGTTTTTCCCACCACATTGGTGTGTGTACTTCCGTGGCTGCTGAATTATGGGGTGTCTACACGGGGCTAAAGATGGCATGGGATATGGGCTTCAAGAAAGTCATTCTAGAAGTGGATTCCATGATAGTCAGAAGCGTTATCTTGGAAGATATTGACTGGTGTGGTCCTAATGCCAACCTTATTGCGCTCTGTCAACAAGCGCTTGGAAGAGAATGGGAGGTGCAAGTCGACCATGTCTATCGAGAAGCCAATGGTGTAGCAGATGCACTTGCAAATAAAGCTTTGGAGTTGGAGCAGGGGGTGCACTTCTTTGATATCTCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_380796.p1 GENE.S_Transcript_380796~~S_Transcript_380796.p1 ORF type:3prime_partial len:1364 (+),score=167.46,RVT_1|PF00078.23|2.8e-41,RVT_3|PF13456.2|3.7e+03,RVT_3|PF13456.2|1.2e-15,zf-RVT|PF13966.2|2.5e-13,Exo_endo_phos|PF03372.19|2.6e-12,Exo_endo_phos|PF03372.19|5.4e+03,Exo_endo_phos_2|PF14529.2|6.3e-06,Exo_endo_phos_2|PF14529.2|2.2e+03 S_Transcript_380796:314-4402(+)
MDRFPNFLSSHKPIKFLVWNCQGAANRSFLRCLREFIRQHDPAVLVLVETWISGNKADEVCKAINFSGCFRVEAQGFSGGIWVLWRTEEVSVQLLSSSSQYANVLISRRHEPTWMFSAIYGSPVENTREQLWNELMDLASSHSYPWMLAGDFNAIASPEEKHGGANNGQRRCARFAQWINDVQLIDLGFSGPRFTWSRGTNERTRVQERLDRALCNSHWRHMFPEATIRHLPTIRSDHCPLLINTHGGIPATRALRPFRFQAAWLLHDEFDGVVRRSWNSSAPLLHEIQRLEHTLQNWNVTSFGNIFKNKRRLWARLDGIQRALAEGFKPHLLSLERQLHQELEAVLEQEEVMAYQKARYERIKFGDRNTSFFHTMTLIRRRKNKVEGLLNDQDEWVWDPAQLCSMAVDFYRKLYQKEDTPHLNVLPKLCFPVLSQDVLDPLFQPYSPEEIKKALFDMAPHKAPGPDGFHAVFFQKMWDVVGISICEFALEFFRLNHLPEGMNDTLLVLIPKVPDPERLTQMRPISLCNVTYKILTKVLANRIKGILPKLISPTQASFVPGRQISDNIVITQEVIHAMKRRTTGAGWMAIKIDLEKAYDRLKWEFISDTLLELPFPVNMVGAIMASVQGMRMRLLWNGEKTDAFEPTRGIRHGDPLSPYLFVLCMERLAHRIQMAVDDKKWKTIRLSRKSPPLSHLFFADDLILFAEATLDQANVILKCLEDFCISSGQRVNKQKSAVYFSKGVPAHMQQLVSEDLGIPKTDNLGNYLGVPILHNRVGKNSYKHIIDKVNKRLAGWKAQHLSFAGRLTLVKSVTSTIPNHVMQTVHLPVSVCSQLDQKNRNFLWGDTEDKKKPHLVNWDQVCRPKSVGGLGIRSARQANTALLSKLGWRLLKEPEALWARVLKAKYGGDRSGINMFKPIAGASPAWRGLNKCAPVLQQGMGWNVTNGSTVRFWLDNWLGPGNLLSQAKCEIGEEELQSNVADYWDEPQGWKWEEFSSKLPAITLLKIAAIQLRPQSPISDSIVWQRSTKGCFSTSSAFDIFRPKEKDVVDRIWKSIWDVSCPERFRTFAWLVAHDRILANATRCYRVMTDSPACTYCDGHWEDTLHVLRNCFAASSIWNKLVVPSARMDFYTWNLRDWLYKNCTSNLGVNSSWDWPRVFLTTMWFIWRWRCYRCFGGHMRIPFNQISFLHKQFQEITRALDEDDCHQGPPKVLTFIRWQYPLPPWVKLNTDGAAKGNPGTASAGGVIRDSLGQWVQGFSHHIGVCTSVAAELWGVYTGLKMAWDMGFKKVILEVDSMIVRSVILEDIDWCGPNANLIALCQQALGREWEVQVDHVYREANGVADALANKALELEQGVHFFDIS

Click here to download the sequence:
Link to NCBI Protein BLAST