Transcript Information: S_Transcript_380936.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value2E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.33794287282769
Replicate 20.21012180530967
Replicate 30.11709673703873
Condition 2: 8 Hour
Replicate 10.47389756260296
Replicate 20.42613045028051
Replicate 30.60902421728518
Condition 3: 24 Hour
Replicate 10.27739534591231
Replicate 20.64753747360992
Replicate 30.32027992895385


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_380936.p1 GENE.S_Transcript_380936~~S_Transcript_380936.p1 ORF type:complete len:315 (+),score=37.73,PIF1|PF05970.10|6.1e-69 S_Transcript_380936:77-946(+)
ATGGCCAGAAAAGAAAATGTGGAAAGTGTTGACTGGCTGTTACAGGACATGTGCAGCTGCTCACAACCCTTTGGGGGCAAAGTATTTGTGTTTGGTGGTGATTTTAGGCAAGTGTTGCCTGTCATTCCTAAACGAGCCCAGAATGAACTGGTGGAGGCTAGCCTTGTTAGCTCATACTTGTGGCCGATTTTCAACCGATTCACACTTGTTGAGAACATGCGTGCTAAAGAAGATCCTGAATTCACAGCTTTCCTCCTTAAGCTGGGCAATGGTGAATTCCAGAAGACCGAGCAGGCAGCTATTACACTACACACCTCACTTCTATGTAAACTCCCACCAACTGAAAATTGCTTGGACTACCTTGTGGCTTCGGTGTATCCAGATATCAATGAACTGGCAGCTAATCCTCATGCATTCACCGCACGAGCAACATTAACTCCAACCAATGATGAAGTTGATTGTATCAACAAACTTGTCATAGACAAGTTCCCAGGAGAGCCATGTGTTTACAAGAGCTACGATACTACGATAGATGATGATTGTAATGCCCATCCTGTTGAATTTCTAAACACCCTATGTCCAGGAGGGATGAGTTCCCATAACTTAATACTGAAGCTCAATTGCCCGGTCATACTGCTTCGAAATCTAAACCCAGCCATTGGCTTGTGTAATGGAACAAGACTCATTTGCAGAGGATTCAAGTCCAACGTTGTTATTTGTGAGATATCAACAGGTTATCGAGCTGGTGAATATGTCTTCATACCACGCATAAGCTTGAGGCCATCAGCCTCCATTACATATCCTTACAAGTTTGAAAGAAGGCAATTTCCAATCAAATTGTGTTTCGCAATGACAATTAACAAGTCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_380936.p1 GENE.S_Transcript_380936~~S_Transcript_380936.p1 ORF type:complete len:315 (+),score=37.73,PIF1|PF05970.10|6.1e-69 S_Transcript_380936:77-946(+)
MARKENVESVDWLLQDMCSCSQPFGGKVFVFGGDFRQVLPVIPKRAQNELVEASLVSSYLWPIFNRFTLVENMRAKEDPEFTAFLLKLGNGEFQKTEQAAITLHTSLLCKLPPTENCLDYLVASVYPDINELAANPHAFTARATLTPTNDEVDCINKLVIDKFPGEPCVYKSYDTTIDDDCNAHPVEFLNTLCPGGMSSHNLILKLNCPVILLRNLNPAIGLCNGTRLICRGFKSNVVICEISTGYRAGEYVFIPRISLRPSASITYPYKFERRQFPIKLCFAMTINKS*

Click here to download the sequence:
Link to NCBI Protein BLAST