Transcript Information: S_Transcript_381080.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value0.0003
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.073542631858383
Replicate 30.061475786945335
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.075546038587825
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_381080.p1 GENE.S_Transcript_381080~~S_Transcript_381080.p1 ORF type:5prime_partial len:300 (-),score=-5.62,rve|PF00665.22|2.6e+03,rve|PF00665.22|3e-14,gag_pre-integrs|PF13976.2|1.2e-08 S_Transcript_381080:453-1352(-)
CCGCATTCTTGGCTACTCGATAGCGGGGCTAGTCATCATATTACTAATGACTTGGCCAACCTCTCCCTTCATGCTCCTTACGAAGGTTCCAACGAACTTATTATTGGAGACGGATCATCCCTTCCTATCACCCACATAGGTTCTTTCTCTCTTCACACTCCCTCAAAAATTTTTCAATTTCATAATGTCTTGTGTGTCCCCCAAATCTCCAAAAACATTATATCTATCTCCCAATTTTGCAAAGACAATAATATTTCCATAGAATTCTTACCCTCTTCCTTTTGTGTTAAGGAACTCTCGACGGGTCACACTCTCCTCCAAGGGCAGCCTAGCGGCGGCACTTATGACTGGATACCGCAAGCACCTCATCTCTTCTCCAGCACCACCACAAACTATCTAAATTGGCATCATAAGCTTGGACACCCGTCTCCATCTATTATCCAACAACTTAGGAATCAGTTTTCAATTCCAATTCCTAGTTCTAATAAAGACCACTACTGTAATTCTTGTTTGATCAATAAAAGTCAAAAGCTTCCTTTTGCTACTTCTACTATCACTTCATCCAAACCACTATATATTATTTTTAGTGATGTTTGGACCTCCCCCATTTATTCTCATGATAATTACAAATACTATATCATATTTGTTGATCACTTTACCAAGTATATGTGGTTCTACCCTTTAAAACAAAACTCTGACACACATACTATTTTTATACGCTTCAAAGCTTTAGTTGAAAAATATTTCAATACACCCATTCGTCATATATATTCCGATAACGGGGGCGAGAATATCAAACTAACTCCCACCCTCCTTGATAATGGAATAACTCACCTTACAACTCCCCCGCATACTCCTGAACACAACGACTACGCTGAACGGCATCACCTCACATTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_381080.p1 GENE.S_Transcript_381080~~S_Transcript_381080.p1 ORF type:5prime_partial len:300 (-),score=-5.62,rve|PF00665.22|2.6e+03,rve|PF00665.22|3e-14,gag_pre-integrs|PF13976.2|1.2e-08 S_Transcript_381080:453-1352(-)
PHSWLLDSGASHHITNDLANLSLHAPYEGSNELIIGDGSSLPITHIGSFSLHTPSKIFQFHNVLCVPQISKNIISISQFCKDNNISIEFLPSSFCVKELSTGHTLLQGQPSGGTYDWIPQAPHLFSSTTTNYLNWHHKLGHPSPSIIQQLRNQFSIPIPSSNKDHYCNSCLINKSQKLPFATSTITSSKPLYIIFSDVWTSPIYSHDNYKYYIIFVDHFTKYMWFYPLKQNSDTHTIFIRFKALVEKYFNTPIRHIYSDNGGENIKLTPTLLDNGITHLTTPPHTPEHNDYAERHHLTL*

Click here to download the sequence:
Link to NCBI Protein BLAST