Transcript Information: S_Transcript_381443.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.051790585815763
Replicate 30
Condition 2: 8 Hour
Replicate 10.25029800841705
Replicate 20.052516076619077
Replicate 30.05003720095066
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_381443.p1 GENE.S_Transcript_381443~~S_Transcript_381443.p1 ORF type:complete len:426 (-),score=60.29,UBN2|PF14223.2|3.6e-17,UBN2_3|PF14244.2|9.5e-14,UBN2_2|PF14227.2|6.7e-10,Retrotrans_gag|PF03732.13|3.4e-07 S_Transcript_381443:300-1577(-)
ATGGAGAGCACAGTCACAAAATTGTCTCCCATTTGCTCTGCAGATTTACATGGTATCAGAGCCTTTTCGTTCTTGGTCTTCACCATGTCATCTGACAATTTTGATTCTTCTACAAATCTAATCTCTCTTTTGGAAACATCGTCTTCCAACTTTGCCAAGCCAAAAATACAAATTGTTCTTGACCTCGATAATCACGACTCATGGCAGCAAATCATTAAACAAGCTCTTGAAGCTTTTGAACTTGAAAACTTTCTCAGTCAAAGTTCGGTGCCTCCTGCTACAATTTCCACACCAAGCAGTGACCCACCTACAACTCAACCAAATCCGGCGTACGGAATTTGGAAGAAGAAAGATCGCCTCATTCTTCTGTGGCTAAAATCCACTATTTCATCTTGTATCCTGGCGTGTGTTTCTCGCACCAACACCACACATGAAACATGGAGTACTCTAAATCGAATTTTTCAAATTCAAGCCCGATCTCGGATTATGTATGTCCGAAATCAGTTGCAGAACCTTAAAAAGGGCTCTCTTTCCATTCTTGAGTATGTTGAGAAGAAAAGATCACTTGCCAATAGCCTTGCTGAGGCACAAGCACCCATAAGTGATGAAGAGCTTGTTTCTCATATTGTTTCGGGTATGGACTCAGTAAGTTACGGACCGTTTCGCACTAGCCTTAATATGCGTTTGGAGCCCACAACTCCAGATGAATTGTTGGGTTTACTCCTTCAAGAGGAGCAACGCCTTAATGAAGAAAATCAGTCGCTTACAGCTTCAGTCAATGTTGCACATCGCTTTAATAATACCTCAAGTGGTTCATCAAAGCCCAGATCGAGTTCTTTTTCTTCGTCTCGGTCTTATGCCTCGAATCCATCATCACATTCTAATGACAATTTCTCTAAGGGGAAGCGTGTCGTTTGTCAAATTTGTGAAAAACCTGGGCACTCTGCTCGAGATTGCTATCAAAGGGACAACAGGAAGACTTATCCACCTCGGCGTCCACAACGTTCAGTTCATCTTGCTTCTACAAATCCAAGTGATATAGTTGACCCGTCTTGGTATCTGGACTCTGGAGCTACTAATCATGTTACAGCTGATCTACAAAAACTCTCTATGGCTTCTACATATGATGGTGATGATAGAGTTGCAGTGGGTGATGGTATGTCTCTATCTATAAATCATATTGGTTCATCCACAATTGGTACTAATGTCACTCCTTTACATTTACGTGAAATTCTTCATGTACCCTCTATGACAAAAAATTTGTTGAGTATTTCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_381443.p1 GENE.S_Transcript_381443~~S_Transcript_381443.p1 ORF type:complete len:426 (-),score=60.29,UBN2|PF14223.2|3.6e-17,UBN2_3|PF14244.2|9.5e-14,UBN2_2|PF14227.2|6.7e-10,Retrotrans_gag|PF03732.13|3.4e-07 S_Transcript_381443:300-1577(-)
MESTVTKLSPICSADLHGIRAFSFLVFTMSSDNFDSSTNLISLLETSSSNFAKPKIQIVLDLDNHDSWQQIIKQALEAFELENFLSQSSVPPATISTPSSDPPTTQPNPAYGIWKKKDRLILLWLKSTISSCILACVSRTNTTHETWSTLNRIFQIQARSRIMYVRNQLQNLKKGSLSILEYVEKKRSLANSLAEAQAPISDEELVSHIVSGMDSVSYGPFRTSLNMRLEPTTPDELLGLLLQEEQRLNEENQSLTASVNVAHRFNNTSSGSSKPRSSSFSSSRSYASNPSSHSNDNFSKGKRVVCQICEKPGHSARDCYQRDNRKTYPPRRPQRSVHLASTNPSDIVDPSWYLDSGATNHVTADLQKLSMASTYDGDDRVAVGDGMSLSINHIGSSTIGTNVTPLHLREILHVPSMTKNLLSIS*

Click here to download the sequence:
Link to NCBI Protein BLAST