Transcript Information: S_Transcript_38172.p1


Annotated TAIR IDAT5G46580.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18897510-18899645 | Reverse length=711
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 134.147784011668
Replicate 238.925284226299
Replicate 346.83991967676
Condition 2: 8 Hour
Replicate 1113.40824725136
Replicate 2124.0904352025
Replicate 3120.87899074178
Condition 3: 24 Hour
Replicate 130.162391430527
Replicate 238.468422159574
Replicate 334.368113505995


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_38172.p1 GENE.S_Transcript_38172~~S_Transcript_38172.p1 ORF type:complete len:717 (+),score=149.35,PPR_2|PF13041.2|0.0063,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|2e-07,PPR_2|PF13041.2|0.0092,PPR_2|PF13041.2|6.3e-11,PPR_2|PF13041.2|2.6,PPR_2|PF13041.2|9.3e-10,PPR_2|PF13041.2|7e-06,PPR_2|PF13041.2|0.027,PPR_2|PF13041.2|1e+03,PPR|PF01535.16|2.8e+03,PPR|PF01535.16|0.0019,PPR|PF01535.16|0.00014,PPR|PF01535.16|13,PPR|PF01535.16|6.6e-07,PPR|PF01535.16|0.0026,PPR|PF01535.16|2e-05,PPR|PF01535.16|1.5e-05,PPR|PF01535.16|14,PPR|PF01535.16|9.7e+03,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.51,PPR_3|PF13812.2|3.1e-05,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|0.0045,PPR_3|PF13812.2|0.008,PPR_3|PF13812.2|17,PPR_3|PF13812.2|3.9e+03,PPR_1|PF12854.3|0.0035,PPR_1|PF12854.3|0.00072,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|1.2e-06,PPR_1|PF12854.3|0.43,PPR_1|PF12854.3|0.047,PPR_1|PF12854.3|1.1e-05,PPR_1|PF12854.3|1.6e+02 S_Transcript_38172:176-2326(+)
ATGACAGCTCCCCTTACAATGTCAATGGATCTTCATTACAACATGACTGTTCCAACAAATGCTTCAGAACCCAAACACCCAAGTTTCTTCACTAAACAATCATCATCGAGACACCCACTAAGAAAATTCACCATCTTTTGCAATTCCTCTAAAACCCCACCTAAATTAGAAGAATCTCGTAACAAAAACCCTTCATTAGCTGAGCAACTTAAGCCACTTTCTGCAACTGTTCTTTCTGACAATACGAAAGACCAAGCTCAGCTTCTCACAAAGCCACCCAAGTCAACTTGGGTCAACCCCACTAGGCCTAAACCTTCTGTTTTATCTCTACAACGTCAGAAAAGATCATCTTATAGTTATAACCCTCAAATTAGGGACCTTAAGTTGTTTACCAAGAAGCTTAATGACTGTGATATTGTCTCTGAGGAGGGTTTCAATTCCATTCTTGAGGAAATCCCACATCCTATTAATAGAGATAGTGCACTTTTGATGCTTAATTCTTTGAGACAATGGCAAAAGACTTTGCTTTTCTTTAATTGGGTCAAGACCCAGAATTTGTTCCCTATGGAAACTATCTTTTATAATGTTACTATGAAGTCTTTGAGGTTTGGTAGGCAGTTTGAGCTCATTGAGGGCCTTGCTTATGAGATGATTGATAATGGGGTCGAGCTCGATAACATTACTTATTCGACAATTATTACTTGTGCTAAGAGGTGTAATCTTTTTGACAAGGCTGTAGAGTGGTTTGAGAGGATGTATAAGACTGGTTTGATGCCTGATGAGGTTACTTATTCTGCTGTTCTGGATGTGTATGCCAAAGTGGGGAAAGTTGAGGAGGTTATGAGTTTGTATGAGAGAGGACGGGCGAGTGGGTGGACCCCAGATCCTATTGCATTTTCTGTGTTGTGTAAGGTGTTTGGTGAGGCTGGGGACTATGATGGTATTAGGTTTGTGTTGCAGGAGATGAGATCTCTTGGGGTTCAGCCTAATTTGGTTGTTTACAATACCTTATTAGAGGCATTGGGTAAGGCCGGAAAGCCTGGCCTGGCTAGGAGTTTGTTTGAGGAAATGATCGATTCAGGTGTTATCCCTAATGAGAAGACCTTAACAGCACTTGTCAAGGTGTATGGGAAGGCAAGGTGGAGTCGTGATGCTTTGGAGCTGTGGGAACGAATGAGGTCCACTGGGTGGCCAATGGACTTCATATTGTACAACACGTTGCTGAGTATGTGTGCAGACCTTGGATTGGAAGAGGAGGCAGAGAGGCTATTTGAGGATATGAAGCAGTCTGAGTTTTGTAGGCCAGATAGCTTTAGCTATACAGCTATGCTTAACATATATGGTAGTGGAGGGAAGGTTGATAGGGCAATGGAGTTGTTTGAGGAAATTTCTGAAACAGGTGTTGAGCTCAATGTCATGGGATGCACTTGTTTGATTCAGTGCTTAGGAAGGAGCAAGGAAATTGATGGCTTAGTTAGAGTTTTTGAGGCATCGATCGAAAGAGGCATCAGGCCAGATGACAGGCTGTGTGGCTGCTTGCTCTCAGTTGTGTCTTTCTGTGATAACATTGAAGATGGTAATAAGGTTCTTGGTTGTTTGGAACGAGCAAATCCAAAGTTGGTTGCCTTCATTGGTATGATCAGCAAAGAGGGATCCAGCTTTGAGACTTTGAAGGAAGAGTTCAAGGCTATACTTAGTAATGCACAAGTTGAATCTCGAAGACCCTTCTGTAATTGTTTGATTGACATATGCAGAAACAAAAACATGCAACAGAGAGCACATGAGCTTCTATACTTGGGAACCGTTTTTGGGTTATACCCAGGTTTGCACAAGAGAACTGCAGGTGAATGGAGTTTGAACGTGAGATCACTTTCCATTGGTGCAGCTCACACAGCTTTCGAAGAGTGGATGGCCAGTATGTTGAGAATTATAGAGCGTCAAGAGGCATTGCCAGAGTCATTTTCTGCCTATACCGGTGCAGGAACTCACAAGTTCTCGCAAGGTTTAGCTGGTGCATTTGCATCTCATGTAGAGAAATTGGCTGTACCATTTAGGCTGAGTGAAGATAAAGCTGGTTATTTCGTTGCTACTCGAGATGACATAGTATCATGGGCACAATCAAGGGGCCGATCCCCTGCTTTAACAGTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_38172.p1 GENE.S_Transcript_38172~~S_Transcript_38172.p1 ORF type:complete len:717 (+),score=149.35,PPR_2|PF13041.2|0.0063,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|2e-07,PPR_2|PF13041.2|0.0092,PPR_2|PF13041.2|6.3e-11,PPR_2|PF13041.2|2.6,PPR_2|PF13041.2|9.3e-10,PPR_2|PF13041.2|7e-06,PPR_2|PF13041.2|0.027,PPR_2|PF13041.2|1e+03,PPR|PF01535.16|2.8e+03,PPR|PF01535.16|0.0019,PPR|PF01535.16|0.00014,PPR|PF01535.16|13,PPR|PF01535.16|6.6e-07,PPR|PF01535.16|0.0026,PPR|PF01535.16|2e-05,PPR|PF01535.16|1.5e-05,PPR|PF01535.16|14,PPR|PF01535.16|9.7e+03,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.51,PPR_3|PF13812.2|3.1e-05,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|0.0045,PPR_3|PF13812.2|0.008,PPR_3|PF13812.2|17,PPR_3|PF13812.2|3.9e+03,PPR_1|PF12854.3|0.0035,PPR_1|PF12854.3|0.00072,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|1.2e-06,PPR_1|PF12854.3|0.43,PPR_1|PF12854.3|0.047,PPR_1|PF12854.3|1.1e-05,PPR_1|PF12854.3|1.6e+02 S_Transcript_38172:176-2326(+)
MTAPLTMSMDLHYNMTVPTNASEPKHPSFFTKQSSSRHPLRKFTIFCNSSKTPPKLEESRNKNPSLAEQLKPLSATVLSDNTKDQAQLLTKPPKSTWVNPTRPKPSVLSLQRQKRSSYSYNPQIRDLKLFTKKLNDCDIVSEEGFNSILEEIPHPINRDSALLMLNSLRQWQKTLLFFNWVKTQNLFPMETIFYNVTMKSLRFGRQFELIEGLAYEMIDNGVELDNITYSTIITCAKRCNLFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKVGKVEEVMSLYERGRASGWTPDPIAFSVLCKVFGEAGDYDGIRFVLQEMRSLGVQPNLVVYNTLLEALGKAGKPGLARSLFEEMIDSGVIPNEKTLTALVKVYGKARWSRDALELWERMRSTGWPMDFILYNTLLSMCADLGLEEEAERLFEDMKQSEFCRPDSFSYTAMLNIYGSGGKVDRAMELFEEISETGVELNVMGCTCLIQCLGRSKEIDGLVRVFEASIERGIRPDDRLCGCLLSVVSFCDNIEDGNKVLGCLERANPKLVAFIGMISKEGSSFETLKEEFKAILSNAQVESRRPFCNCLIDICRNKNMQQRAHELLYLGTVFGLYPGLHKRTAGEWSLNVRSLSIGAAHTAFEEWMASMLRIIERQEALPESFSAYTGAGTHKFSQGLAGAFASHVEKLAVPFRLSEDKAGYFVATRDDIVSWAQSRGRSPALTV*

Click here to download the sequence:
Link to NCBI Protein BLAST