Transcript Information: S_Transcript_38496.p1


Annotated TAIR IDAT3G46610.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:17160224-17162221 | Reverse length=665
E-Value7.4E-272
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.121940766858
Replicate 216.162990678625
Replicate 315.797051102248
Condition 2: 8 Hour
Replicate 132.790015195146
Replicate 229.226732624044
Replicate 329.539370984619
Condition 3: 24 Hour
Replicate 114.634246460969
Replicate 214.709381886599
Replicate 313.805380851268


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_38496.p1 GENE.S_Transcript_38496~~S_Transcript_38496.p1 ORF type:complete len:718 (+),score=144.57,PPR_2|PF13041.2|5.8,PPR_2|PF13041.2|8.3e-09,PPR_2|PF13041.2|9.4e-13,PPR_2|PF13041.2|38,PPR_2|PF13041.2|0.00029,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|1.9e-06,PPR_2|PF13041.2|2.4e-10,PPR_2|PF13041.2|1.4e-13,PPR_2|PF13041.2|0.019,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|25,PPR|PF01535.16|0.047,PPR|PF01535.16|0.00012,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|2.4e+03,PPR|PF01535.16|4.8,PPR|PF01535.16|0.47,PPR|PF01535.16|0.0081,PPR|PF01535.16|0.0029,PPR|PF01535.16|0.8,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|0.16,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.2e+04,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|0.0073,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|0.09,PPR_3|PF13812.2|0.49,PPR_3|PF13812.2|29,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|0.42,PPR_1|PF12854.3|12,PPR_1|PF12854.3|2e+02,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|5.5e+03,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|4.5e+03,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|11,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|0.0046 S_Transcript_38496:387-2540(+)
ATGCAAGCATTAAGCATCTGGTCTCCAAAATGGGACACTTTGGAAATGCCCCATTTGGACCTTCACCTTGGTTCTGCGTCTCTTGGGCGTGAGATAAACAAAAGGAGAAAAAGATTGGATGTTTCTGACTCTATTGTTAGCCTTAGGAGGCCTGGTATTTTGTTTGCTTCGAGATGCTTAATGATATCCAAAACTCGAGCTATTTGTAGGAGCTCAAGGTTTGATTTGGGATGTGGGTGTTTTTCGGGATTTTTTGATGCTAAAGTTGTTCTTTATAACAACCCTAGAACTTCTGTTGGCATGTGTTTTGAGTTGGGTTGGGCTTTACAAGAGCATGCAGTGAGTGAGAATAATACTGAAGAGAATTCACAACGAAATGATATGCATTTGGATGAGAATGGAACTACTGAAGATGGTGAAGTAGAAACTAGGGAAAAAGAGAATAAGGGACGGATTAATGTTCGTGCACTTGCCCAAAGTTTAGTGCTCGCTGAATCAGTAGAGGATGTAGAAGAGCTTCTCAAGGACAAGGTTGAGGTGCCTCTCCAAGTGTTTTCGTCTATCATTAGAGGGTTTGGCCGAGAGAAGAAACTAGAGCCTGCGATACTTGTTGTTGACTGGCTTAAGAGGAAGAATGAGGAGAATGGTGAGTTTGAAGGCCCGAATCTTTTCATTTATAATAGCCTCTTAGGTGCTGTTAAACAGTCTGGGCAATTCGATAAAGTCGAAATGGTCATGAATGAGATTGTACAAGCTGGGATTTCTCCTAATGTCGTGACTTATAACACTTTGATGGGTATCTATTTGGATCAAGGCAGAGCGGCTGAGGCTCTCAGTATTTTTGAGGATATCCAAAGTAAGGGTCTATCTCCGTCTCCGGCTTCTTATTCTACGGCCTTGTTGTCTTACCGGAAGTTGGAAGATGGGTTCGGAGCATTGAACTTGTTTCTCTCTTTGAGAGAGAAGTATTGTAACGGGGAGCTAAAACAGAACTATGATGCTGAAGATTGGGAAACTGAGTTTGACAAGTTCAAGAACTTTATGAGTCGTGTGTGCTACCAAGTGATGCGACGATGGCTTGTGAAAGAAGGGAACTACAGCACCAATGTATTGAAATTATTGATAGAAATGGATAAGGCTGATCTTCCACCCACTCGTGAGGAGTATGAGCGCCTTGTTTGGGCTTGTACTCGTGAGGAGCACTGTTCTGTTGCCAAAGAATTGTACACTAGGATTAGGGAACGACAACCAGATATCAGTTTGTCTGTTTGTAATCATATCATCTGGTTGATGGGCAAGGCCAAGAAATGGTGGGCTGCTTTGGAGATTTATGAAGATTTGTTAGATAAGGGGCCTAAGCCAAACAATTTGTCATATGAGCTGATTATATCTCACTTTAATGTTTTGTTAAGTGCTGCTAGGAAAAGAGGAATTTGGAGATGGGGGGTAAGGTTGCTGAACAAGATGGAAGAGAAAGGTTTTAAACCAGGAAGCAGGGAGTGGAATGCTGTTCTTGTAGCCTGTTCCAAGGCTTCGGAAACTACTGCTGCCGTAGAAATCTTCAGCAGAATGATTGAGAGAGGTGAGAAGCCAACCATAGTTTCATACGGAGCATTGCTCAGTGCTCTCGAGAAAGGAAAACTATATGATGAAGCTGTTCGGGTGTGGGAACATATGCTTAAAGTTGGTGTGGAACCCAATGTGTATGCATACACCATTATGGCCTCAGTTTATGCCAGACTTGAGAAGTTCCATGTTGTTGACTACCTCATTAAAGAGATGGTTTCAACAGGAAACGATCCAACAGTCGTCACTTTCAATGCAATTATCAGCGTATGTTCAAGAAATGGTTTGGGTGGTGCTGCATATGAGTGGTTTCAGCACATGAAAACAATGAACATCGAACCAAATGAGATCACTTACGAAATCTTGATCGAGGCTCTCGCAAAAGATGGAAAGCCGAGACTAGCATATGATATCTATTTGAGGGCAGTGAATGAGGGCCTAAACCCCTCTGCGCAGGCTTATGATGCTGTCATTCAATCATCAAAGACGTTGGGTGCGACTATCGATGTAAATGCACTAGGACCTAGGCCACCTGAGAAATCAAAGAAGATCGTGACTGACTCTAACCTAGCTGATGATCCTAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_38496.p1 GENE.S_Transcript_38496~~S_Transcript_38496.p1 ORF type:complete len:718 (+),score=144.57,PPR_2|PF13041.2|5.8,PPR_2|PF13041.2|8.3e-09,PPR_2|PF13041.2|9.4e-13,PPR_2|PF13041.2|38,PPR_2|PF13041.2|0.00029,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|1.9e-06,PPR_2|PF13041.2|2.4e-10,PPR_2|PF13041.2|1.4e-13,PPR_2|PF13041.2|0.019,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|25,PPR|PF01535.16|0.047,PPR|PF01535.16|0.00012,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|2.4e+03,PPR|PF01535.16|4.8,PPR|PF01535.16|0.47,PPR|PF01535.16|0.0081,PPR|PF01535.16|0.0029,PPR|PF01535.16|0.8,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|0.16,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.2e+04,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|0.0073,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|0.09,PPR_3|PF13812.2|0.49,PPR_3|PF13812.2|29,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|0.42,PPR_1|PF12854.3|12,PPR_1|PF12854.3|2e+02,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|5.5e+03,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|4.5e+03,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|11,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|0.0046 S_Transcript_38496:387-2540(+)
MQALSIWSPKWDTLEMPHLDLHLGSASLGREINKRRKRLDVSDSIVSLRRPGILFASRCLMISKTRAICRSSRFDLGCGCFSGFFDAKVVLYNNPRTSVGMCFELGWALQEHAVSENNTEENSQRNDMHLDENGTTEDGEVETREKENKGRINVRALAQSLVLAESVEDVEELLKDKVEVPLQVFSSIIRGFGREKKLEPAILVVDWLKRKNEENGEFEGPNLFIYNSLLGAVKQSGQFDKVEMVMNEIVQAGISPNVVTYNTLMGIYLDQGRAAEALSIFEDIQSKGLSPSPASYSTALLSYRKLEDGFGALNLFLSLREKYCNGELKQNYDAEDWETEFDKFKNFMSRVCYQVMRRWLVKEGNYSTNVLKLLIEMDKADLPPTREEYERLVWACTREEHCSVAKELYTRIRERQPDISLSVCNHIIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIISHFNVLLSAARKRGIWRWGVRLLNKMEEKGFKPGSREWNAVLVACSKASETTAAVEIFSRMIERGEKPTIVSYGALLSALEKGKLYDEAVRVWEHMLKVGVEPNVYAYTIMASVYARLEKFHVVDYLIKEMVSTGNDPTVVTFNAIISVCSRNGLGGAAYEWFQHMKTMNIEPNEITYEILIEALAKDGKPRLAYDIYLRAVNEGLNPSAQAYDAVIQSSKTLGATIDVNALGPRPPEKSKKIVTDSNLADDPR*

Click here to download the sequence:
Link to NCBI Protein BLAST