Transcript Information: S_Transcript_387292.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.47523216491394
Replicate 20.39397838495562
Replicate 30.16466728646072
Condition 2: 8 Hour
Replicate 10.76162108275475
Replicate 20.19974864856899
Replicate 30.76128027160648
Condition 3: 24 Hour
Replicate 10
Replicate 20.4047109210062
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_387292.p1 GENE.S_Transcript_387292~~S_Transcript_387292.p1 ORF type:internal len:112 (+),score=21.65,UBN2_3|PF14244.2|3.1e-32 S_Transcript_387292:3-335(+)
GGAATGATTCTCATCACCAAGTCTTTTGATGGTATTGACTTTGGTTCATGGAAGAAAGCTTTCACAATAGCTTTATCGGCTAAGAACAAGCTCGGTTCTGTCACTGGAAAGGTTATTAAACCTAATTCGACTGATAAAAATTTCAGTCAATGGCAAAGATGCAATGATATGATTACTTCATGGATCTTGAATGTTCTTTCTCGAGATATTGCTGAGAGTGTGATTTACTCTGATTCTGCTCAAGATATTTGGAATGAGCTTGATGATCGCTACGGTCAATCTAATGGTCCCAAACTATATCAACTTCAAAAGGATCTTAGCTCAATGTCTCAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_387292.p1 GENE.S_Transcript_387292~~S_Transcript_387292.p1 ORF type:internal len:112 (+),score=21.65,UBN2_3|PF14244.2|3.1e-32 S_Transcript_387292:3-335(+)
GMILITKSFDGIDFGSWKKAFTIALSAKNKLGSVTGKVIKPNSTDKNFSQWQRCNDMITSWILNVLSRDIAESVIYSDSAQDIWNELDDRYGQSNGPKLYQLQKDLSSMSQ

Click here to download the sequence:
Link to NCBI Protein BLAST