Transcript Information: S_Transcript_38828.p1


Annotated TAIR IDAT3G53540.1
Annotated Gene Nameunknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:19846805-19850670 | Reverse length=924
E-Value1.5E-127
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8107815273422
Replicate 22.6839269770997
Replicate 32.3766412478867
Condition 2: 8 Hour
Replicate 13.2757558322194
Replicate 23.1827990848271
Replicate 33.5819414016618
Condition 3: 24 Hour
Replicate 12.544816324162
Replicate 22.2196516492299
Replicate 32.964240270292


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_38828.p1 GENE.S_Transcript_38828~~S_Transcript_38828.p1 ORF type:complete len:970 (+),score=210.39,DUF4378|PF14309.2|1.6e-24,DUF3741|PF12552.4|5.5e-19,DUF3741|PF12552.4|6.4e+03,VARLMGL|PF14383.2|7.4e-07 S_Transcript_38828:590-3499(+)
ATGGAGAAATCTCGGCGAAGAAGGTCGCATGCTAGGGTTTCTTCACCGGTCAAGGTCACAACCCCCTCCCACCTGAAAGAAACTGGAAAACAAACTAGCTCATCACAATCGCGGTTCGATTCCAGTTCTTCTAGTAGTTTTGCAAACGTAGAGGTTGATCGGCTCACACTTGACAGGGGAAGGAATTCAACGTTGCCAACTGGCACCCCAATGAAGAAGTTATTGGCAGATGAGATATCAAAGGATAGTGAATCCAAAAGGCGATCACCTAGCATTATTGCTAGACTGATGGGTCTTGATGGGTTTCCTACTCAGCATAGTAGTAACAAACAACGTAAGAGACTTGGTGAAGAATATCAAGGGAATGTTGTATTTCGCAAGACTGGTGGACTTAACAACTGTCGAAAGACTGCAAAGTGGCAGCAAGAATTTAAAGATGTTTATGAAGTTGCTGAGAGTTTGAACACAGAATCTTGGGGCAACACATCATCTTCAGCTTCCAATTTGAATCCCATTGACGATGATATTGCCTTCATAAGGCAAAAATTCATGGATGTGAAACGCTTTTCTACTGATGAAAAGCTTCATCATTCAAAGGAGTTCCATGATGCACGTGAGGTGCTTTATTCCAACAAAGATATTCTTCTGAAGTTTCTCCATGAATCCGATCCACTGTTCTCGAAGCATCTTCATGATTTGCGTCATGCTCATGAATCTCATGGAAGGCATGGTCTAAGGATGAAATCCAGAAACACTTTGAAGTGCAATATTGATGCCATAGGGTGGCAATCCGCGGGTGAAGCTTCTCAGAAGATAGATATTAGCCATTCTCATAAATATTCTGATAGCGGTCATCCTCATAAATTAAATTCCCGAGCAGAAGGGAAGGAAGATGCTTCTTCGATGCCCACAAGGATTGTGGTCATGAAACCAAATCTTGCTAAGATGCAAAACACTGCTGCATCTGTTTTCTCTCCAAGTCCTCCTTGTGATCCTGGCTCTGATCTTGATTGGTGTGATGAGTGCTCAAATGTACTTCATGCTGGATATGAAATGAGGAGTAAGATAAACCCACATGACGATTTTGATGTTTATGAGTGTAAGTCCCGAGAATCTGGAGACCTAGCTAGGAAAATAACTCGAAGGACGAGAAATAAATTAGGATTAGACACCTTCAGTGTTTCTTTGTCTTGTCGTAAAGGATACTCAGCTGATGAAAGTTCACATGATTCATCGGAGAATGATTCTTCCTATGAATCAGAAGTTACAATTGTAAGTTCCCAGACTTCATTTAAAAAGAGCTTCCGTAACAAAGCTTCACAATGCACTGGGTCATCTGTCAATAGGGAGGCCAAGCGCAGACTCTCTGAGAGATGGAAAATGATTCACAGGTCTCAAGAGGTTGGGGCATCAGGTAAAGGAAGCACACTGGGTGAAATGCTTGCTGTCCCTGAGGTGGACATAAGACCACGGAGTCCTGATTCTGTAGTTGCGCCAGATGAGTTCTTACAAAGATTTGGGGGCAATGATGGAATTTCACAATCGAGTGTTCCCTTGGGTATTAGCAGTAGAGATGGCTGGAAGGATGAATGTATTCGGAGCTTGTCAAACTCTAGGTCCCTTCAAGCTTCTTATCATCTTGGAACTCCTAAATCCTGCAGGAGGCTTGAAGCAAATGTCGCACAAAGGTGTCTGGTCAGGATAGAAAGAACTGATCATGGTGCAGTAATCAGGACAGATTCTAAGGGAAAAAAAGGGTCATTTTCGGAAAGTAAGAAATCCTGTAACAAAAAATTCCAGTCTTCTCATCATGCAAGTGTGGAAATAATACAAGATACACATGAAGCCCAGTTCAGCAAGGGCATGATGGCTAAAAGCCCTGTTGGAAGGGATTCATCTGACGTAAAGGATGTTATATTAGAGATGTCATCTTGCAGACATGGCACTAATTTATCCTGCAATACAGTGATGGACAAGGAGCAAATAAAGGACTGCGATTCTTTGAATTACCCTGATGAACAGCTTCTTGCGTCAGGGTTACCCTGCATTACCTGCCCACAAGATGATTCCTCACAATCCGACCTGCCAGTGCCATCTGGACTAGAGGAACCTTCAACAAGCTGTGATGCAAGCGGGTCATCTTGTTTGCAATGTGTGGCATCTCAACCAGCATCTCCTGTGAGCAGCAAGGAGACTGAGCAACCTAGTCCTGTTTCAGTACTGGAAGCTCCTTTCACTGAAGAACTTTCATCTGGTTCAGAGTGTTTTGAGCGAGTTAGTGCTGAGCATCATGGGTTAAGAATGCAACTTCAGCTATTGAGACTGGAATCTCAAGCATATAACGAAGGCTCTATGATTGTCTCCAGTGATGACGATGTGGAATCATCGACTGATCATCATGATTGCAGGGGATATCTTGGAGTTGGGGAGATCTGGGAATCATCTTACTTGGTAGATGTACTGGCTAAAGCAGGAATTGACGAAACAAAACCTGATTTGTTCCTTGGGACATGGCACTCTCCAGAATGTCCTGTTGCCCCTTGGGTGTTCGAAATTCTTGAGAAGAAATATCTTTCATGGGAATCATGTTTGACGTCAGAGAGAAAGCTGCTGTTTGATAGTATAAATTCTGCCATCGTAGAAATTTCCAGGAATTTTGTAGATCTGCATTGGTGGATGAAGCCACTTCCAATTGCTGGGAGGCCTCAATGGCGAAAGGGTTTGTGGCTCAAAACTGAGCTACAGAATTCATTGAAGAAACATGAAACGAAAGTGACCAATATTGCCATGGACACATTGATACTTGACAACATGTCATGGCCGGAGCTTGCAGAGCATATTGACACCATTGGTAGGGACATTGAGGGATTGGTGTTAGATGAGCTACTAGCAGAAGTACTCCCTGTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_38828.p1 GENE.S_Transcript_38828~~S_Transcript_38828.p1 ORF type:complete len:970 (+),score=210.39,DUF4378|PF14309.2|1.6e-24,DUF3741|PF12552.4|5.5e-19,DUF3741|PF12552.4|6.4e+03,VARLMGL|PF14383.2|7.4e-07 S_Transcript_38828:590-3499(+)
MEKSRRRRSHARVSSPVKVTTPSHLKETGKQTSSSQSRFDSSSSSSFANVEVDRLTLDRGRNSTLPTGTPMKKLLADEISKDSESKRRSPSIIARLMGLDGFPTQHSSNKQRKRLGEEYQGNVVFRKTGGLNNCRKTAKWQQEFKDVYEVAESLNTESWGNTSSSASNLNPIDDDIAFIRQKFMDVKRFSTDEKLHHSKEFHDAREVLYSNKDILLKFLHESDPLFSKHLHDLRHAHESHGRHGLRMKSRNTLKCNIDAIGWQSAGEASQKIDISHSHKYSDSGHPHKLNSRAEGKEDASSMPTRIVVMKPNLAKMQNTAASVFSPSPPCDPGSDLDWCDECSNVLHAGYEMRSKINPHDDFDVYECKSRESGDLARKITRRTRNKLGLDTFSVSLSCRKGYSADESSHDSSENDSSYESEVTIVSSQTSFKKSFRNKASQCTGSSVNREAKRRLSERWKMIHRSQEVGASGKGSTLGEMLAVPEVDIRPRSPDSVVAPDEFLQRFGGNDGISQSSVPLGISSRDGWKDECIRSLSNSRSLQASYHLGTPKSCRRLEANVAQRCLVRIERTDHGAVIRTDSKGKKGSFSESKKSCNKKFQSSHHASVEIIQDTHEAQFSKGMMAKSPVGRDSSDVKDVILEMSSCRHGTNLSCNTVMDKEQIKDCDSLNYPDEQLLASGLPCITCPQDDSSQSDLPVPSGLEEPSTSCDASGSSCLQCVASQPASPVSSKETEQPSPVSVLEAPFTEELSSGSECFERVSAEHHGLRMQLQLLRLESQAYNEGSMIVSSDDDVESSTDHHDCRGYLGVGEIWESSYLVDVLAKAGIDETKPDLFLGTWHSPECPVAPWVFEILEKKYLSWESCLTSERKLLFDSINSAIVEISRNFVDLHWWMKPLPIAGRPQWRKGLWLKTELQNSLKKHETKVTNIAMDTLILDNMSWPELAEHIDTIGRDIEGLVLDELLAEVLPV*

Click here to download the sequence:
Link to NCBI Protein BLAST