Transcript Information: S_Transcript_388479.p1


Annotated TAIR IDAT5G53210.1
Annotated Gene Namebasic helix-loop-helix (bHLH) DNA-binding superfamily protein
Annotated Gene Symbol(s)SPCH
Annotation TypeOrtholog
Chromosome Positionchr5:21586606-21588941 | Reverse length=364
E-Value6.5E-120
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8675790340478
Replicate 21.2902216115506
Replicate 30.26963064449708
Condition 2: 8 Hour
Replicate 10.74825930937309
Replicate 20.65414762104464
Replicate 30.68559743758712
Condition 3: 24 Hour
Replicate 10
Replicate 20.2650738196064
Replicate 30.14749733570243


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_388479.p1 GENE.S_Transcript_388479~~S_Transcript_388479.p1 ORF type:complete len:342 (+),score=64.75,HLH|PF00010.22|3.2e-10 S_Transcript_388479:391-1416(+)
ATGAGTGATAGCATCTCTAGTTTCTTTGAGAGTCCGGAACTCGGAGATCCGAATTTTTCCGGACTACCAGCCACTCCAGAGGACCTCTTCAGCATATTTGATGCCTTGGAAGGTTTGAAAGACTCAGTCACGGTTAGTGATGAAACAATAAAGAGGTCTTTATTGTTTCAAGACTTGTCTGAGACTGAGTTAGAAGTTGAAGCTGAAAGTGACGAGCCCAACAAAAAGAGGGCAAGGATCGGTGATAATGAAGAAACAAAAGCAATCGGAGGTGGTGGTGGAGGAGAAGCAAATAAGATGTCACACATAACTGTTGAGAGGAACCGCAGAAAGCAAATGAATGAACATCTCTCCGTCTTGCGTTCCCTCATGCCTTGCTTCTATGTGAAGAGGGGAGATCAAGCATCAATAATTGGTGGAGTTGTGGATTACATCAATGAGTTACAACAAGTACTTCAATCCCTAGAGGCCAAGAAGCAAAGAAAGGTGTATAGTGAAGTTCTTAGCCCTAGGCCAGTGCCAAGCCCAAGACCTTCACCACCAGTACTTAGCCCTAGAAAACCACCATTAAGTCCAAGGCTTAACTTACCTATAAGTCCAAGAACCCCTCAACCAAGTAGCCCTTATAATAGGCCAAGAATGAACCTCTCTCCATCAATAACTACTTCTATTACTACTCCCATTGATCTCTCACCTTCTTCTTCAAGCTCTTCTCTTAATGATTCGGTCGCTAACGAGTTGATTGCTAATTCGAGCTCTCCAATGGCTGAGGTTGAAGTCAAGCTCTCTGGCCCTAATGTTCTTGTCAAGACAGTATCGCCGCGAATTCCAGGACAAGTTGTGAAGATAATCTCTGCCCTTGAAGATTTATGCCTTGAGATTCTTCATATAAGCATTAGTACCATTGAAGAGACTATGCTTAACTCCTTTACCATCAAGATAGGAATTGAATGCCAGCTGAGTGCTGAGGAGCTTGCTCACCAAATCCAACAAACATTCTGCTCAACTCCACTTATTATCAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_388479.p1 GENE.S_Transcript_388479~~S_Transcript_388479.p1 ORF type:complete len:342 (+),score=64.75,HLH|PF00010.22|3.2e-10 S_Transcript_388479:391-1416(+)
MSDSISSFFESPELGDPNFSGLPATPEDLFSIFDALEGLKDSVTVSDETIKRSLLFQDLSETELEVEAESDEPNKKRARIGDNEETKAIGGGGGGEANKMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKVYSEVLSPRPVPSPRPSPPVLSPRKPPLSPRLNLPISPRTPQPSSPYNRPRMNLSPSITTSITTPIDLSPSSSSSSLNDSVANELIANSSSPMAEVEVKLSGPNVLVKTVSPRIPGQVVKIISALEDLCLEILHISISTIEETMLNSFTIKIGIECQLSAEELAHQIQQTFCSTPLIIN*

Click here to download the sequence:
Link to NCBI Protein BLAST