Transcript Information: S_Transcript_388759.p1


Annotated TAIR IDAT3G22430.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7953455-7957605 | Forward length=510
E-Value0.001
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.90726140574479
Replicate 20.37607027654855
Replicate 30.31436481960683
Condition 2: 8 Hour
Replicate 10.60583495219128
Replicate 20.88978943453458
Replicate 30.72667662289709
Condition 3: 24 Hour
Replicate 10.62059328098279
Replicate 20.25754331336758
Replicate 30.42992121145084


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_388759.p1 GENE.S_Transcript_388759~~S_Transcript_388759.p1 ORF type:3prime_partial len:176 (-),score=53.13,XS|PF03468.10|2.8e-10 S_Transcript_388759:2-526(-)
ATGGCCTCCTGTTGTTGTTGTCAACAATCTGGTGGAAACAGTCTCAAAGAGCAGGTGAATTTCTCCAAAGAAAATGTAGGGAATGTTTTGAAAGATGAGGGTTTTGACATGCGAAATGCCAAGGTATGCTATGGAAGAGCTGGGAACCCAAAGATTATGGTGGTGACATTCACTGGCACTCTTTCTGGCCTTGAAGAAGCAGAGAAGCTTCATAACTTCTTCAGTAAGGAGAAACGCGGAAGGATAGAGCTGCAACAAGCTATTGGTGCAGCCAGTGGCAGCAAAGATGCTCCTCTAGTGCCAGAAGACAATATAAAATGTAGCCATACAATCAGTGGCGTCAAGAATGCTCCTGAACTTCCAGTGGGCAATGTCAAACATGGCCATACAGCCAGTGACAACAAAGATGCTTCCCAAGTGCCAGATCACCATGTTGAAGACAGCTGCAGAGTCATTGACCTCGAGAATGCTCCTCAATTGGCAGTGGACAATGTAGAGCATAGCAGTACAGTCAGTGAGACCAAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_388759.p1 GENE.S_Transcript_388759~~S_Transcript_388759.p1 ORF type:3prime_partial len:176 (-),score=53.13,XS|PF03468.10|2.8e-10 S_Transcript_388759:2-526(-)
MASCCCCQQSGGNSLKEQVNFSKENVGNVLKDEGFDMRNAKVCYGRAGNPKIMVVTFTGTLSGLEEAEKLHNFFSKEKRGRIELQQAIGAASGSKDAPLVPEDNIKCSHTISGVKNAPELPVGNVKHGHTASDNKDASQVPDHHVEDSCRVIDLENAPQLAVDNVEHSSTVSETK

Click here to download the sequence:
Link to NCBI Protein BLAST