Transcript Information: S_Transcript_388871.p1


Annotated TAIR IDAT4G20520.1
Annotated Gene NameRNA binding;RNA-directed DNA polymerases
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:11045912-11047716 | Forward length=376
E-Value3E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.54684249113384
Replicate 20.30222999393856
Replicate 30.50528044064659
Condition 2: 8 Hour
Replicate 10.43819295172191
Replicate 20.30646367999626
Replicate 30.29199791239701
Condition 3: 24 Hour
Replicate 10.29924497932321
Replicate 20.31046317227873
Replicate 30.34550745760433


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_388871.p1 GENE.S_Transcript_388871~~S_Transcript_388871.p1 ORF type:3prime_partial len:146 (+),score=19.07,RVT_1|PF00078.23|4.9e-11 S_Transcript_388871:2885-3319(+)
ATGGTTTCTCATTCTGCTTCTTCAAGAGATCGTGGAAAGTGGTGGGGGATGACATATGTAGAGCATTTCACCAATTCTTTGAAAATGAGAGGATTCTCAAATCACTTGACTGCATTGTCATTTATGTTACTAGAAAGGTACCCAACCCTAACTCCCCTGCTAATTTTAGGCCTAAACATGATGTATAAAGTGATGTCAAACCTTTTAACTGAGAAGCTAAAACTGGTAGTTGAGGATTTGATTGGTCATGAACAAGCTGCATTCATTGCTGTAAGTTCTATTCATAACAATGTGTTACTAACACATAACCTTGTTCATGCTTATGGTAGAAAGCAGATCTCACCTAGAGCTATGGTGAAGATTGATATAAGGAAAGCTTATGATAGTGTATCTTGGGAGTTTTTAAAGGCTATGTTATTATACTGTGAGTTCCTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_388871.p1 GENE.S_Transcript_388871~~S_Transcript_388871.p1 ORF type:3prime_partial len:146 (+),score=19.07,RVT_1|PF00078.23|4.9e-11 S_Transcript_388871:2885-3319(+)
MVSHSASSRDRGKWWGMTYVEHFTNSLKMRGFSNHLTALSFMLLERYPTLTPLLILGLNMMYKVMSNLLTEKLKLVVEDLIGHEQAAFIAVSSIHNNVLLTHNLVHAYGRKQISPRAMVKIDIRKAYDSVSWEFLKAMLLYCEFL

Click here to download the sequence:
Link to NCBI Protein BLAST