Transcript Information: S_Transcript_38988.p1


Annotated TAIR IDAT2G41410.1
Annotated Gene NameCalcium-binding EF-hand family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:17262085-17262735 | Reverse length=216
E-Value5.9E-52
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 130.871081432809
Replicate 228.926768530964
Replicate 325.491959653332
Condition 2: 8 Hour
Replicate 144.735929909719
Replicate 245.638571225042
Replicate 347.179076032359
Condition 3: 24 Hour
Replicate 119.320585842792
Replicate 221.555803010393
Replicate 321.410713250565


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_38988.p1 GENE.S_Transcript_38988~~S_Transcript_38988.p1 ORF type:complete len:225 (+),score=4.43,EF-hand_1|PF00036.28|5.6e-06,EF-hand_1|PF00036.28|7.8e-06,EF-hand_1|PF00036.28|9.8e-08,EF-hand_1|PF00036.28|5.1e-06,EF-hand_7|PF13499.2|1.8e-12,EF-hand_7|PF13499.2|9.4e-10,EF-hand_6|PF13405.2|8.6e-07,EF-hand_6|PF13405.2|0.012,EF-hand_6|PF13405.2|2.7e-07,EF-hand_6|PF13405.2|0.46,EF-hand_5|PF13202.2|9.4e-05,EF-hand_5|PF13202.2|0.0018,EF-hand_5|PF13202.2|2.7e-06,EF-hand_5|PF13202.2|0.026,EF-hand_8|PF13833.2|0.51,EF-hand_8|PF13833.2|1.7e-08,EF-hand_8|PF13833.2|0.00098,EF-hand_8|PF13833.2|13 S_Transcript_38988:151-825(+)
ATGAAGCAACTCCTCAAATCCATCAACCCCAAACAAATCTTCCGTTTGAAGAAGTCCAGATCCGTCTCGAAATCCGCCCCGACTTCTTTCTCTCTCAACTCCAACTACTCATCCTCCACCTCATCCTCCGACTCCTCCGTCAAGGACTCCCGGTCCGTCACGCTCCCGGTCCGAACCCGGTCTGATGACTGGTCCGATTCCTCCCCCGCCACGTCACCCACGTCCGCCCTCAACTTCGACTACGTCCAAGCGTTCAAGATGCTGGACCGTGACAACGACGGCAAGATCACGCGCGTGGAGCTCGAATCCCTCCTGAGGCGCGTCGTGTCCACCACCATAGGCGCAGAGGAGGTCGAAGCCATGATTCTCGAGATCGACCGTGACGGCGATGGTTGCATCTCCCTCGACGAGCTCCGCACCGTTGGATCCGCCTTCGAATCGACGGCTCTCGTTGAAGAAGACGAGCTCAAGGAAGCCTTCGACATCTTCGACTCCGACCACGACGGCAAGATCACCGCCGAGGAGCTCCACGAGGTGTTCCTCATGTTGGGGGACGACCGGTGCACGTTAGCCGATTGCCGGCGTATGATAGAAAGTGTTGATAAGAATGGGGATGGGTTCGTCTGTTTCCAGGACTTCCTTCTTATGATGGACCACCAACAACATCAACGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_38988.p1 GENE.S_Transcript_38988~~S_Transcript_38988.p1 ORF type:complete len:225 (+),score=4.43,EF-hand_1|PF00036.28|5.6e-06,EF-hand_1|PF00036.28|7.8e-06,EF-hand_1|PF00036.28|9.8e-08,EF-hand_1|PF00036.28|5.1e-06,EF-hand_7|PF13499.2|1.8e-12,EF-hand_7|PF13499.2|9.4e-10,EF-hand_6|PF13405.2|8.6e-07,EF-hand_6|PF13405.2|0.012,EF-hand_6|PF13405.2|2.7e-07,EF-hand_6|PF13405.2|0.46,EF-hand_5|PF13202.2|9.4e-05,EF-hand_5|PF13202.2|0.0018,EF-hand_5|PF13202.2|2.7e-06,EF-hand_5|PF13202.2|0.026,EF-hand_8|PF13833.2|0.51,EF-hand_8|PF13833.2|1.7e-08,EF-hand_8|PF13833.2|0.00098,EF-hand_8|PF13833.2|13 S_Transcript_38988:151-825(+)
MKQLLKSINPKQIFRLKKSRSVSKSAPTSFSLNSNYSSSTSSSDSSVKDSRSVTLPVRTRSDDWSDSSPATSPTSALNFDYVQAFKMLDRDNDGKITRVELESLLRRVVSTTIGAEEVEAMILEIDRDGDGCISLDELRTVGSAFESTALVEEDELKEAFDIFDSDHDGKITAEELHEVFLMLGDDRCTLADCRRMIESVDKNGDGFVCFQDFLLMMDHQQHQR*

Click here to download the sequence:
Link to NCBI Protein BLAST