Transcript Information: S_Transcript_390121.p1


Annotated TAIR IDAT5G04780.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1384540-1386447 | Forward length=635
E-Value2.3E-255
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.13836915720198
Replicate 20.15294828116128
Replicate 30.09588944237574
Condition 2: 8 Hour
Replicate 10.48046806607059
Replicate 20.65913592179437
Replicate 30.591080696152
Condition 3: 24 Hour
Replicate 10.075718833589581
Replicate 20.15711481162113
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_390121.p1 GENE.S_Transcript_390121~~S_Transcript_390121.p1 ORF type:complete len:577 (+),score=113.44,PPR|PF01535.16|4.6e+03,PPR|PF01535.16|4e-06,PPR|PF01535.16|3.6e-08,PPR|PF01535.16|0.21,PPR|PF01535.16|3.4e-05,PPR|PF01535.16|0.16,PPR|PF01535.16|3.6e-09,PPR|PF01535.16|0.23,PPR|PF01535.16|0.079,PPR|PF01535.16|2.4e+02,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|4.3e+02,PPR_2|PF13041.2|4.3e-06,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|6.8e+02,PPR_2|PF13041.2|6.9e-07,PPR_2|PF13041.2|0.067,PPR_2|PF13041.2|2.2e-14,PPR_2|PF13041.2|0.51,PPR_2|PF13041.2|2e+03,DYW_deaminase|PF14432.2|3.6e+03,DYW_deaminase|PF14432.2|3.8e-40,PPR_1|PF12854.3|1.9e-05,PPR_1|PF12854.3|0.0015,PPR_1|PF12854.3|3.6e+03,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|6.2,PPR_1|PF12854.3|0.00033,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|3.3e+03,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|8.3e+03,PPR_3|PF13812.2|48,PPR_3|PF13812.2|0.44,PPR_3|PF13812.2|5.6,PPR_3|PF13812.2|9.8,PPR_3|PF13812.2|9e+02,PPR_3|PF13812.2|7.8e+02 S_Transcript_390121:86-1816(+)
ATGCTTTCATTTTTGCAAAATCTGTTGCAATATTGTGCAAGAAACAGTTTATTTATCGAAGGCAAGGCATGTCACGCTCAAATAGTTCGAGCTGGCTTATGGGATGACCCTGTGACAGCCAATATGCTCATCAACATGTACTGTAAATGCGGCCTTTCGGAGACTGCTCATCAGGTGTTCGACAAAATGCCTGAACGAAGCTTGATTTCTTGGAACACAATGATTGGGGCGTATGCCCAGAACGGGCAGGAGGATGCAGCTCTTTCCCTTTTTGTCGAAATGCAAAGAGAGAGGTCCTCTTTGAGTGAATTCACCCTTTCAAGCGTCCTTTGTGCTTGTGCTGCAAAATCTGCCATTTCTGAGTCCAAACAATTGCATGCATTTGCTGTAAAAAAGGCAATGGACTCTAATATGTATGTCGGAACAGCATTGCTCGATGTTTACTCAAAATGCAATTTTATGAGGGAAGCATCATGGGTTTTTGATGGATTAGAGGAGAAGAGTGATGTCACATGGAGCTCTATGGTTGCAGGTTATGTCAGAAATGAGCTCTATGAAGAGGCTCTAAGGTTGTACCGTAGAGGACAAGCTCTTGGCTTGGAGCAAAATCCGTTTACCCTTTCTTCCATTCTTTCTGCTTGTGCAGGTTTAGCTGCTTTGAATGAAGGGAACCAAGTACATGGAATTCTATGTAAGGTTGGGTTTGGTGGACATGTTTTCGTGTCTTCTTCTCTCATCGATATGTATGCTAAATGTGGAGCCATTAGGGAAGCCTATGCTGTATTTTCTGATCGAGGAAACAAGAACATTGTTTCATGGAATGCAATGATCTCCGGGTTTTCTAGACATGGCCGATGCCTAGAAGCACTGATTCTATTTGAGAAGATGCAGCAAATGGGTTTGCTCCCAAATGAAGTGACTTATCTATCAGTTTTATCTGCATGTGCTCATATGGGTTTAGTTGCAGAAGGACGGAAACATTTTGTCCTCATGGAGACAAAGCATCATGTGTCGCGTAATGTCCTTCACTACTCTTGCTTGGTTGACATTCTTGGCCGTGCTGGACTAATTGAAGATGCATATGAAGTCATTCAGACTATGCCATTTGAAGCGACTGCTTCTATGTGGGGATCGCTTTTAGGCTCATGTAGAAATTTTGGGAATCTCGAATTGGCTGAGATTGCAGCTGAGCATTTGTTTGAGCTAGAACCAATCAATGGTGGAAACCACATATTGCTTTCAAACATATATGCAGCAAACAAGAAGTGGGAAAAGGTTGCTTGGTCAAGGCAGCTACTGAAGGAGAGTGAAGCTTTGAAGGATAGAGGTAAAAGTTGGGTTGAAATTAAGGACAAAGTTCATATCTTTATGTCTGGAGAAAGAGAACATTCTGAAACCACCAAGATCTATTCAAAATTGGACGAACTACTAGAAGAGATGAAGAATTTAGGCTATAAGGTTGAGACTAAGCATGACCTTCATGACGTGAATGATGGCACAAAAGATGTGCTGTTGAGACACCACAGTGAGAAGCTTGCTCTTACTTTTGGACTCATGAGTTCACCCTCAGGTGCTCCCATAAGAATCATGAAGAACCTAAGAATTTGTGGGGATTGTCATAACTTTATGAAGTTTGCATCAAAAATAGCAGAGAGGGAAATAATAGTTAGAGATGTAAACCGGTTCCATCATTTTCATAACGGTTGTTGCTCATGTGCAGACTTCTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_390121.p1 GENE.S_Transcript_390121~~S_Transcript_390121.p1 ORF type:complete len:577 (+),score=113.44,PPR|PF01535.16|4.6e+03,PPR|PF01535.16|4e-06,PPR|PF01535.16|3.6e-08,PPR|PF01535.16|0.21,PPR|PF01535.16|3.4e-05,PPR|PF01535.16|0.16,PPR|PF01535.16|3.6e-09,PPR|PF01535.16|0.23,PPR|PF01535.16|0.079,PPR|PF01535.16|2.4e+02,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|4.3e+02,PPR_2|PF13041.2|4.3e-06,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|6.8e+02,PPR_2|PF13041.2|6.9e-07,PPR_2|PF13041.2|0.067,PPR_2|PF13041.2|2.2e-14,PPR_2|PF13041.2|0.51,PPR_2|PF13041.2|2e+03,DYW_deaminase|PF14432.2|3.6e+03,DYW_deaminase|PF14432.2|3.8e-40,PPR_1|PF12854.3|1.9e-05,PPR_1|PF12854.3|0.0015,PPR_1|PF12854.3|3.6e+03,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|6.2,PPR_1|PF12854.3|0.00033,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|3.3e+03,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|8.3e+03,PPR_3|PF13812.2|48,PPR_3|PF13812.2|0.44,PPR_3|PF13812.2|5.6,PPR_3|PF13812.2|9.8,PPR_3|PF13812.2|9e+02,PPR_3|PF13812.2|7.8e+02 S_Transcript_390121:86-1816(+)
MLSFLQNLLQYCARNSLFIEGKACHAQIVRAGLWDDPVTANMLINMYCKCGLSETAHQVFDKMPERSLISWNTMIGAYAQNGQEDAALSLFVEMQRERSSLSEFTLSSVLCACAAKSAISESKQLHAFAVKKAMDSNMYVGTALLDVYSKCNFMREASWVFDGLEEKSDVTWSSMVAGYVRNELYEEALRLYRRGQALGLEQNPFTLSSILSACAGLAALNEGNQVHGILCKVGFGGHVFVSSSLIDMYAKCGAIREAYAVFSDRGNKNIVSWNAMISGFSRHGRCLEALILFEKMQQMGLLPNEVTYLSVLSACAHMGLVAEGRKHFVLMETKHHVSRNVLHYSCLVDILGRAGLIEDAYEVIQTMPFEATASMWGSLLGSCRNFGNLELAEIAAEHLFELEPINGGNHILLSNIYAANKKWEKVAWSRQLLKESEALKDRGKSWVEIKDKVHIFMSGEREHSETTKIYSKLDELLEEMKNLGYKVETKHDLHDVNDGTKDVLLRHHSEKLALTFGLMSSPSGAPIRIMKNLRICGDCHNFMKFASKIAEREIIVRDVNRFHHFHNGCCSCADFW*

Click here to download the sequence:
Link to NCBI Protein BLAST