Transcript Information: S_Transcript_39116.p1


Annotated TAIR IDAT4G34350.1
Annotated Gene Name4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Annotated Gene Symbol(s)CLB6, ISPH, HDR
Annotation TypeOrtholog
Chromosome Positionchr4:16428681-16431038 | Reverse length=466
E-Value1.6E-198
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.345719150249
Replicate 216.250852666405
Replicate 320.895478478351
Condition 2: 8 Hour
Replicate 111.780778282611
Replicate 211.729485859703
Replicate 311.121311793903
Condition 3: 24 Hour
Replicate 140.114133877869
Replicate 232.865424971327
Replicate 333.865916400731


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_39116.p1 GENE.S_Transcript_39116~~S_Transcript_39116.p1 ORF type:complete len:391 (+),score=83.80,LYTB|PF02401.14|5.6e-55 S_Transcript_39116:446-1618(+)
ATGGCGATCGCTCCTCCTCATATGTGCCGTATCTTCACCTTCACTGAGCTTCCATTACCGGAAACTCCTCATGGCCGTTCGATCAGATTCTCTCCTTTTTACCGGAGGTCTCATCTGTCAGTCCGATGTGCTGCAGCTGGTGACTCGTCTTCTTCTTCTGCGGCTGCGGCTGTTGATTCTGAGTTCGATGCCAAGACTTTCCGCCATAACTTGACCAGAAGCAAGAATTACAATCGTAAAGGGTTTGGCCATAAGGAAGAGACTCTCGAGCTCATGAATCGCGAGTATACTAGTGATATTATAAAGACTCTGAAGGAAAATGGCAACACATATACATGGGGGAATGTGACGGTGAAGTTGGCTGAAGCATATGGGTTCTGCTGGGGTGTGGAGCGAGCAGTTCAGATTGCATATGAAGCTAGGAAGCAATTCCCCAGTGAGAGAATCTGGATCACTAATGAAATCATTCATAACCCGACTGTCAACAAGCGCCTGGAAGAAATGGAAGTTCAGAACATCCCTATTGAGGACGGAAGGAAGCAATTTGAAGTGGTTGACAAAGATGATGTTGTGATTTTGCCGGCTTTTGGAGCTGCTGTGGAAGAAATGAAGACTTTGAGTGATAAAAGTGTACAAATAGTAGACACAACTTGCCCTTGGGTGTCAAAGGTATGGAACACTGTGGAGAAGCACAAAAAGGGAGAGTATACTTCTATTATTCACGGGAAATATGCTCATGAAGAGACCATTGCTACCGCATCTTTTGCTGGGAAGTATTTAATTGTGAAGGATATGAAAGAGGCAACTTATGTGTGTGATTACATTCTTGGTGGACAACTTGACGGTTCTAGCTCAACCAGAGAGGCATTTTTAGAGAAATTCAAGAATGCTATGTCAGAGGGGTTTGATCCTGACAAAGACCTTATAAAAGTTGGAATAGCAAACCAAACTACAATGCTTAAGGGAGAAACAGAAGAGATTGGAAAGCTGCTTGAGAGAACTATGATGCGCAAGTATGGAATAGAAAATGTCGACAACCACTTCCAAAGTTTCAACACAATATGTGATGCTACTCAAGTACTTTCTCTTCTGTTGGTCCCCCTTCCCTCAAAGACCAGACTAAGCCATGATGTTTTGTTGCTTGTCACTCTGTATTTTTCCAGCTACATATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_39116.p1 GENE.S_Transcript_39116~~S_Transcript_39116.p1 ORF type:complete len:391 (+),score=83.80,LYTB|PF02401.14|5.6e-55 S_Transcript_39116:446-1618(+)
MAIAPPHMCRIFTFTELPLPETPHGRSIRFSPFYRRSHLSVRCAAAGDSSSSSAAAAVDSEFDAKTFRHNLTRSKNYNRKGFGHKEETLELMNREYTSDIIKTLKENGNTYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPSERIWITNEIIHNPTVNKRLEEMEVQNIPIEDGRKQFEVVDKDDVVILPAFGAAVEEMKTLSDKSVQIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYAHEETIATASFAGKYLIVKDMKEATYVCDYILGGQLDGSSSTREAFLEKFKNAMSEGFDPDKDLIKVGIANQTTMLKGETEEIGKLLERTMMRKYGIENVDNHFQSFNTICDATQVLSLLLVPLPSKTRLSHDVLLLVTLYFSSYI*

Click here to download the sequence:
Link to NCBI Protein BLAST