Transcript Information: S_Transcript_39117.p1


Annotated TAIR IDAT4G34350.1
Annotated Gene Name4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Annotated Gene Symbol(s)CLB6, ISPH, HDR
Annotation TypeOrtholog
Chromosome Positionchr4:16428681-16431038 | Reverse length=466
E-Value1.2E-272
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1281.50517062843
Replicate 2330.38563858396
Replicate 3332.2792114558
Condition 2: 8 Hour
Replicate 1243.49474028071
Replicate 2230.81543838172
Replicate 3236.35513373759
Condition 3: 24 Hour
Replicate 1467.27857920426
Replicate 2388.52248416596
Replicate 3433.80856627035


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_39117.p1 GENE.S_Transcript_39117~~S_Transcript_39117.p1 ORF type:complete len:476 (+),score=104.30,LYTB|PF02401.14|3.3e-84 S_Transcript_39117:446-1873(+)
ATGGCGATCGCTCCTCCTCATATGTGCCGTATCTTCACCTTCACTGAGCTTCCATTACCGGAAACTCCTCATGGCCGTTCGATCAGATTCTCTCCTTTTTACCGGAGGTCTCATCTGTCAGTCCGATGTGCTGCAGCTGGTGACTCGTCTTCTTCTTCTGCGGCTGCGGCTGTTGATTCTGAGTTCGATGCCAAGACTTTCCGCCATAACTTGACCAGAAGCAAGAATTACAATCGTAAAGGGTTTGGCCATAAGGAAGAGACTCTCGAGCTCATGAATCGCGAGTATACTAGTGATATTATAAAGACTCTGAAGGAAAATGGCAACACATATACATGGGGGAATGTGACGGTGAAGTTGGCTGAAGCATATGGGTTCTGCTGGGGTGTGGAGCGAGCAGTTCAGATTGCATATGAAGCTAGGAAGCAATTCCCCAGTGAGAGAATCTGGATCACTAATGAAATCATTCATAACCCGACTGTCAACAAGCGCCTGGAAGAAATGGAAGTTCAGAACATCCCTATTGAGGACGGAAGGAAGCAATTTGAAGTGGTTGACAAAGATGATGTTGTGATTTTGCCGGCTTTTGGAGCTGCTGTGGAAGAAATGAAGACTTTGAGTGATAAAAGTGTACAAATAGTAGACACAACTTGCCCTTGGGTGTCAAAGGTATGGAACACTGTGGAGAAGCACAAAAAGGGAGAGTATACTTCTATTATTCACGGGAAATATGCTCATGAAGAGACCATTGCTACCGCATCTTTTGCTGGGAAGTATTTAATTGTGAAGGATATGAAAGAGGCAACTTATGTGTGTGATTACATTCTTGGTGGACAACTTGACGGTTCTAGCTCAACCAGAGAGGCATTTTTAGAGAAATTCAAGAATGCTATGTCAGAGGGGTTTGATCCTGACAAAGACCTTATAAAAGTTGGAATAGCAAACCAAACTACAATGCTTAAGGGAGAAACAGAAGAGATTGGAAAGCTGCTTGAGAGAACTATGATGCGCAAGTATGGAATAGAAAATGTCGACAACCACTTCCAAAGTTTCAACACAATTTGTGATGCTACTCAAGAGCGACAAGATGCAATGTATAAGCTGGTTGATGAACACGTAGACCTTATGTTGGTGGTTGGAGGCTGGAATTCTAGTAACACCTCTCACTTGCAAGAGATAGCCGAGGACCGTGGGATCCCCTCGTACTGGATTGACAGTGAAGCTAGAATAGGCCCTGGAAACAGAATTAGTTACAAGTTGAAACATGGGGAGCTAGTTGAGAAAGAAAATTTCCTACCACAAGGTCATATCACAATAGGAGTAACTTCCGGTGCTTCTACCCCAGACAAGGTGGTGGAAGACGCCCTGATCAAGGTTTTTGACATCAAGCGAGAAGAGTTATTGCAACATGAAGCAGTAGCTGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_39117.p1 GENE.S_Transcript_39117~~S_Transcript_39117.p1 ORF type:complete len:476 (+),score=104.30,LYTB|PF02401.14|3.3e-84 S_Transcript_39117:446-1873(+)
MAIAPPHMCRIFTFTELPLPETPHGRSIRFSPFYRRSHLSVRCAAAGDSSSSSAAAAVDSEFDAKTFRHNLTRSKNYNRKGFGHKEETLELMNREYTSDIIKTLKENGNTYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPSERIWITNEIIHNPTVNKRLEEMEVQNIPIEDGRKQFEVVDKDDVVILPAFGAAVEEMKTLSDKSVQIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYAHEETIATASFAGKYLIVKDMKEATYVCDYILGGQLDGSSSTREAFLEKFKNAMSEGFDPDKDLIKVGIANQTTMLKGETEEIGKLLERTMMRKYGIENVDNHFQSFNTICDATQERQDAMYKLVDEHVDLMLVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEARIGPGNRISYKLKHGELVEKENFLPQGHITIGVTSGASTPDKVVEDALIKVFDIKREELLQHEAVAA*

Click here to download the sequence:
Link to NCBI Protein BLAST