Transcript Information: S_Transcript_392194.p1


Annotated TAIR IDAT3G59090.2
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 198 Blast hits to 197 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 190; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:21839334-21842449 | Forward length=373
E-Value0.0006
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.20491928981778
Condition 2: 8 Hour
Replicate 10.47389756260296
Replicate 20.49715219199393
Replicate 30.23684275116646
Condition 3: 24 Hour
Replicate 10.48544185534654
Replicate 20
Replicate 30.28024493783462


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_392194.p1 GENE.S_Transcript_392194~~S_Transcript_392194.p1 ORF type:3prime_partial len:90 (+),score=9.73 S_Transcript_392194:256-522(+)
ATGTATTTGTTCCATCTTCAAAGTTCAAACTTCAGTAGCAAGAATGCCTTTTGTTCAGCTTACAGAAATAGACCACCAAGCTTCCATACAGGGAAGACGAATTGCAACTTGCAAGACAATATTTTACAAGTCCACAACCTTGTCTGTCTTTATTTGATTCTATCCTGTAATATCTTGTTAATTATGCAGGTCAAAGGTCTTGCTGTTGTTTCTCTTGTATGCTTCACAACAAGTGCTTTGGTAGCTCTTCTCACAGATATTCCGGTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_392194.p1 GENE.S_Transcript_392194~~S_Transcript_392194.p1 ORF type:3prime_partial len:90 (+),score=9.73 S_Transcript_392194:256-522(+)
MYLFHLQSSNFSSKNAFCSAYRNRPPSFHTGKTNCNLQDNILQVHNLVCLYLILSCNILLIMQVKGLAVVSLVCFTTSALVALLTDIPV

Click here to download the sequence:
Link to NCBI Protein BLAST