Transcript Information: S_Transcript_393177.p1


Annotated TAIR IDAT5G24740.1
Annotated Gene NameProtein of unknown function (DUF1162)
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:8470073-8489703 | Reverse length=3464
E-Value8E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.95046432982787
Replicate 21.2382177812891
Replicate 30.94095592263268
Condition 2: 8 Hour
Replicate 10.97922710639896
Replicate 21.2555629338622
Replicate 31.0875432451521
Condition 3: 24 Hour
Replicate 11.4488953335598
Replicate 20.23126338343212
Replicate 30.51473560010441


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_393177.p1 GENE.S_Transcript_393177~~S_Transcript_393177.p1 ORF type:internal len:196 (-),score=27.08,VPS13_mid_rpt|PF16910.1|1.4e-11 S_Transcript_393177:3-587(-)
CGGCTAGTTTCCAAAATAGAGTATGTTCTTTCAAAACGCCACAGATTTATTTGGGATGTGAATTTTGTCAATATTTCTGTCTGTCTGCCTTGGAATAACACAGACTCAGAACCATGCAGTATGGTGATCCAGACTGTGGACCTTCGACTGTGTTCTAAAACCGATGCTCCTCCTGTTCTATCCAAAATTGATGATCAATGTCAAGTCACGAGCAGATGCCTAGGCATGGAAGGTGGTAGTAATATTCTGAATGCAGTGCAGCTCGAGGAGATATATGACCATTATGAAGTGAGCCTGAATGATTTTCAGGTGACATTGATAACGCCCAGTTTCCCTCGAGGATTGTCACTTCTGGAGAACTTTTCTGCTGTTGTGGTGCTTGCACAATGTGTCATCCCAGATGAGTTGATATTGAAACAACTAGAGGTTCATCTTATCGTATCATCTCTTCATTTACGCTTCTCTGCTTCTACTTATTTTGCATTCCTCAGCCTAGCTGATCATTTTCACGTTTTATCCTTGAAGTCTGAGCACAACAGAGTTAAAGCGTCTCTTTCACCCATCACCCCACTAAGTTATCAGACA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_393177.p1 GENE.S_Transcript_393177~~S_Transcript_393177.p1 ORF type:internal len:196 (-),score=27.08,VPS13_mid_rpt|PF16910.1|1.4e-11 S_Transcript_393177:3-587(-)
RLVSKIEYVLSKRHRFIWDVNFVNISVCLPWNNTDSEPCSMVIQTVDLRLCSKTDAPPVLSKIDDQCQVTSRCLGMEGGSNILNAVQLEEIYDHYEVSLNDFQVTLITPSFPRGLSLLENFSAVVVLAQCVIPDELILKQLEVHLIVSSLHLRFSASTYFAFLSLADHFHVLSLKSEHNRVKASLSPITPLSYQT

Click here to download the sequence:
Link to NCBI Protein BLAST