Transcript Information: S_Transcript_39489.p1


Annotated TAIR IDAT5G46850.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19010714-19012010 | Forward length=325
E-Value8.3E-58
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.4791473131254
Replicate 26.4169551327412
Replicate 36.7502824881152
Condition 2: 8 Hour
Replicate 16.8993909849548
Replicate 28.4808315104846
Replicate 37.5928999638659
Condition 3: 24 Hour
Replicate 14.711641537187
Replicate 25.9992442407978
Replicate 34.5333739943836


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_39489.p1 GENE.S_Transcript_39489~~S_Transcript_39489.p1 ORF type:complete len:306 (+),score=53.31,PIG-X|PF08320.8|8.8e-24 S_Transcript_39489:159-1076(+)
ATGGGAGTTGGGTTGGTTCTATTTATACTCCTTGCTCGCTTTACCATCTGCTTTTCCAGCTCTGTTAGCTCTTCCCCTTTTCATCAGAACAGTAAAAACAATGATGACATATACTCTAGCAAATATGGCACAAGCTTGGCGCCTTGTTTCGAGAGATATGTTGCAAAATCTTATTTTAAAGAGTGTGAAAGATTTGTGGATTCAGAGTTCCAAGAGTTTGTGGCCCATAAGCTTTCAGTGGGTACAGGCAAAGCCTTTCCCAGGTTACTGAACTTGGAGCGCCATCTAATTGGTGAAGGTGCTCATCGACGTCTATCTTCATCCATCCGGTTCAGCATTCAACCAGATTTGATGCCTGCCTCTTCCTCACAGGTGTGTGAGGTCATAATTATTGAAAGACTACCATCTGGAGTTTTTGCAGACCCTTTTGAGTTAAATCATCTTCTTCAACGCAAAGTATTCAATGATGCTTATGTTTTTGGTGATGTAAATTTGGAATTGCCTTCATTCCGTTCCAATCGGTCTATTGTTGAAGTTCACGTAGATTCTACAGTGATCAAGCCATCAGGGCAGGAGATTGTACAAGAGTTCAAGATAGAGATGCCATTGCATGCACGATATCCTCCCCTGGAAGACAGTGGATATTCGGAAGTGAGATTTGGCATTCCTGATTTGTTAATGCTCTGCAAGATTCATGAAGAGCTGCCTGCTTCAAGCTGTTTGTTAACATCTATTGCTAGTAGTGGCAGTCTGCAATTCAATGATGTTGTATGGAGCATACCGGCTGGTGTCAAGGCCCATGCAGGAATTGTATCGGTTGTTTCTCTTACAGCAGCCTTATTATCGGCAATTTTGATTATCATTGCTACATTCCACCAGTCATCAATGCAGTCTGTCGAAAGGTTGAAACAGCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_39489.p1 GENE.S_Transcript_39489~~S_Transcript_39489.p1 ORF type:complete len:306 (+),score=53.31,PIG-X|PF08320.8|8.8e-24 S_Transcript_39489:159-1076(+)
MGVGLVLFILLARFTICFSSSVSSSPFHQNSKNNDDIYSSKYGTSLAPCFERYVAKSYFKECERFVDSEFQEFVAHKLSVGTGKAFPRLLNLERHLIGEGAHRRLSSSIRFSIQPDLMPASSSQVCEVIIIERLPSGVFADPFELNHLLQRKVFNDAYVFGDVNLELPSFRSNRSIVEVHVDSTVIKPSGQEIVQEFKIEMPLHARYPPLEDSGYSEVRFGIPDLLMLCKIHEELPASSCLLTSIASSGSLQFNDVVWSIPAGVKAHAGIVSVVSLTAALLSAILIIIATFHQSSMQSVERLKQP*

Click here to download the sequence:
Link to NCBI Protein BLAST