Transcript Information: S_Transcript_395608.p1


Annotated TAIR IDAT2G13770.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:5736603-5737847 | Forward length=343
E-Value8E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.21511392922814
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.21792126515719
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_395608.p1 GENE.S_Transcript_395608~~S_Transcript_395608.p1 ORF type:5prime_partial len:104 (-),score=19.10,Plant_tran|PF04827.10|5.6e-28 S_Transcript_395608:48-359(-)
CTATTTGCTGAACATCAAGAAGGTGCAAGAAAAGACGTAGAGCGTGCTTTTGGTGTTTTACAAGCTCGTTTTGCGATTCTCCGCCAACCATCTCTTGCATGGGATAAAGATGTTTTGGGAAAGATAATGAATTCATGCATCATTATGCACAATATGATCGTGGAAGATGAGCGAGATGCAAATCTTGACCATGGTAATACAGAAAAATTTGATGAAGATAATCGACAATTTCAACCGTCCACCAGCGACGTAAACATGGACGATGGTGGTTCCACAAGTCCCTCTGCTCAATCAACTATATTGCTGACATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_395608.p1 GENE.S_Transcript_395608~~S_Transcript_395608.p1 ORF type:5prime_partial len:104 (-),score=19.10,Plant_tran|PF04827.10|5.6e-28 S_Transcript_395608:48-359(-)
LFAEHQEGARKDVERAFGVLQARFAILRQPSLAWDKDVLGKIMNSCIIMHNMIVEDERDANLDHGNTEKFDEDNRQFQPSTSDVNMDDGGSTSPSAQSTILLT*

Click here to download the sequence:
Link to NCBI Protein BLAST