Transcript Information: S_Transcript_397256.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value9E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.53226002470361
Replicate 20.35300463292024
Replicate 30.36885472167201
Condition 2: 8 Hour
Replicate 10.51180936761119
Replicate 20.71589915647125
Replicate 30.51158034251955
Condition 3: 24 Hour
Replicate 10.69903627169901
Replicate 20.36262098522156
Replicate 30.30266453286139


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_397256.p1 GENE.S_Transcript_397256~~S_Transcript_397256.p1 ORF type:internal len:250 (+),score=26.58,UBN2|PF14223.2|8.7e-14,UBN2_2|PF14227.2|4e-12,UBN2_3|PF14244.2|3.9e-11 S_Transcript_397256:2-748(+)
TCGATGGGTGTCTTCTCAACATCATTTGGTGGGCTTTTGTCGACGGGTCTTCCTGCTATGGGCCATACTTTCCCTCCGGTGGCTGCACCCTATGTCACTAATCTTGTGACTACCACGCTTGCTACTGTTGAGGACTTCCTCCCTTGGAGAACCCAGTTCACTGCGTTCCTGGTCTCTCATGGTCTTCTAGGTTATGTTGATGGTTCGATCTGTCGTCCTCTCGAGTACTTCCGCGACACTCAATGTATTCATCGTATCAATCCTGATTATCAATCTTGGCTTCGCATTGATCAAAGTATACGTTGTTGGCTGTATGCTACTGTATCAAAAGAATTATCGGTTGAATTTCATGATGTTAATCATTCCTTTGATATTTGGACACGCTTGCATACTCATTTTAATACTGATAGTCTTGCTCGCTCCATTGAACTTAAGAGGTCTCCCACAATGTTATGTAAAACTGATCAACAAAGTATTGAGTCATATTTGCGTGATGTTAAGAAAACTGCCGATGCATTAGCTTCTATTCGGTGTCCTGTTTCTAATCAAGATTTAGTGCAATACACTTTAATGGGTTTGCCGTCGGAGTATGAGACTATGATAACCATATTGCTTCACCAATCTGGAAATTTGTTGTTTGATGATCTTCGGGCTACTCTTACCCTTCATGAGCAACGTCTGCGCTTTCTTCGTGGTCAAGAAAATCCTGCTCCCCATCATGCCTTTGCCACGGGTACAGGGGGTGCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_397256.p1 GENE.S_Transcript_397256~~S_Transcript_397256.p1 ORF type:internal len:250 (+),score=26.58,UBN2|PF14223.2|8.7e-14,UBN2_2|PF14227.2|4e-12,UBN2_3|PF14244.2|3.9e-11 S_Transcript_397256:2-748(+)
SMGVFSTSFGGLLSTGLPAMGHTFPPVAAPYVTNLVTTTLATVEDFLPWRTQFTAFLVSHGLLGYVDGSICRPLEYFRDTQCIHRINPDYQSWLRIDQSIRCWLYATVSKELSVEFHDVNHSFDIWTRLHTHFNTDSLARSIELKRSPTMLCKTDQQSIESYLRDVKKTADALASIRCPVSNQDLVQYTLMGLPSEYETMITILLHQSGNLLFDDLRATLTLHEQRLRFLRGQENPAPHHAFATGTGGA

Click here to download the sequence:
Link to NCBI Protein BLAST