Transcript Information: S_Transcript_397258.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value7E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4637150679349
Replicate 20.66188368672544
Replicate 30.55328208250802
Condition 2: 8 Hour
Replicate 10.74638866109965
Replicate 21.7897478911781
Replicate 31.5986885703736
Condition 3: 24 Hour
Replicate 10.54612208726485
Replicate 21.0198715209356
Replicate 30.6305511101279


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_397258.p1 GENE.S_Transcript_397258~~S_Transcript_397258.p1 ORF type:complete len:200 (-),score=22.86,UBN2|PF14223.2|5.4e-10,UBN2_2|PF14227.2|6.3e-08 S_Transcript_397258:78-677(-)
ATGTTAGGTAAAACTGATCAACAAAGTATTGAGTCATATTTGCGTGATGTTAAGAAAATTGCCGATGCATTAGCTTCAATTCGGTGTCCTGTCTCTAATCAAGATTTAGTGCAATACACTTTAATGGGTTTGCCGTCGGAGTATGAGACTATGATAACCATATTGCTTCACCAATCTGGAAATTTGTTGTTTGATGATCTTCGGGCTACTCTTATCCTTCATGAGCAACGTCTATGCCTTCTTCGTGGTCAAGAAAATCCTGCTCCCCATCATGCCTTTGCCACGGGTACAGGGGGTGCTGGTGCGTCTGGTTCCTCCACAGAACCTGGTTCTGGGTCGCGTCACAACAACAATGGTCGTAACAGCAACCGGAACAACAACAATGGCTTCCACGGCAATGCTCGACATAACACCAGAAACAATCATAACAACCGCAATGGTCAAGGCCGTGGGGGATGTGGCCAGCAACGTCGTAACGACATGCAACCTGGTTCCTCCGGTGCCTCGCAACCTGGTTTGACTGCTTCTCTTCTAAGCTTGTTGTGCCTATGTCATTTCATAATACTGGTACCTCAAAATTGTGTTCTAACAATTTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_397258.p1 GENE.S_Transcript_397258~~S_Transcript_397258.p1 ORF type:complete len:200 (-),score=22.86,UBN2|PF14223.2|5.4e-10,UBN2_2|PF14227.2|6.3e-08 S_Transcript_397258:78-677(-)
MLGKTDQQSIESYLRDVKKIADALASIRCPVSNQDLVQYTLMGLPSEYETMITILLHQSGNLLFDDLRATLILHEQRLCLLRGQENPAPHHAFATGTGGAGASGSSTEPGSGSRHNNNGRNSNRNNNNGFHGNARHNTRNNHNNRNGQGRGGCGQQRRNDMQPGSSGASQPGLTASLLSLLCLCHFIILVPQNCVLTIF*

Click here to download the sequence:
Link to NCBI Protein BLAST