Transcript Information: S_Transcript_398423.p1


Annotated TAIR IDAT4G10340.1
Annotated Gene Namelight harvesting complex of photosystem II 5
Annotated Gene Symbol(s)LHCB5
Annotation TypeOrtholog
Chromosome Positionchr4:6408200-6409496 | Forward length=280
E-Value6.2E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.21121429551731
Replicate 20.35020300884944
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.1798715204472
Replicate 30.40034991119232


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_398423.p1 GENE.S_Transcript_398423~~S_Transcript_398423.p1 ORF type:3prime_partial len:126 (+),score=9.25 S_Transcript_398423:46-420(+)
ATGCCGCCGAAGAGCGCCACCAAGAAGATCTCAAATGCAGCCAAGTCCGCTGCCAAGAATGTGCCCAAGCCCGGCGCAGCAGCCAAGCGGGGAGCAAAGCAAGCTCCACGACCAGTGAAGAAGGCAGCGAGTGCCGTCAAATCCGCGGGCTCTCGTGCCACAAAGGGTGGCAGCCGCTCTAGCAAAGGCTGGACCGGCGGTGAAGGCGGGGCCTCCACAGACCTGAACAAGTGGTATGGCCCCAACCGGAACCTCTACCTCCCCGACGGCCTCCTTGACCGCAGCCAGCTGCCCAACCACCTCGACGGCACGCTGCCCGGCGACTACGGCTACGACCCCCTCAACCTTGGCGCCAACGGCAACGTCGAGAAGTAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_398423.p1 GENE.S_Transcript_398423~~S_Transcript_398423.p1 ORF type:3prime_partial len:126 (+),score=9.25 S_Transcript_398423:46-420(+)
MPPKSATKKISNAAKSAAKNVPKPGAAAKRGAKQAPRPVKKAASAVKSAGSRATKGGSRSSKGWTGGEGGASTDLNKWYGPNRNLYLPDGLLDRSQLPNHLDGTLPGDYGYDPLNLGANGNVEKY

Click here to download the sequence:
Link to NCBI Protein BLAST