Transcript Information: S_Transcript_398574.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value3E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.11088773345479
Replicate 20.11504472881395
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_398574.p1 GENE.S_Transcript_398574~~S_Transcript_398574.p1 ORF type:3prime_partial len:197 (-),score=15.66,UBN2_3|PF14244.2|9e-17,DUF4219|PF13961.2|4e-09,DUF4219|PF13961.2|6.1e+02,Retrotrans_gag|PF03732.13|4.6e-06 S_Transcript_398574:2-589(-)
ATGGCGGATCTCGTTAATTCAGCTAGCACACTAGAAAAATTAAATGGTAGCAATTATAGTACTTGGAATATTCGGATAAAGTACTATTTGTTAGGACAAGATTTATGGAGCATAGTTGGTGGAGAAGATACAACACCACCAAGTGATGATACGGAGAAAAAACAAGGGAAGATTAAGACTGGAAAGGTTATGTACATATTGTCTGTCACAGTGGAGGACGAGTACCTAGAGCGAATAAAAGATTTGCAAACCCCGAAGGAAGCGTGGGATACCTCAGAAGCATTATTTACAAAGAAGAATTATGCTAAATTGCAACAGCTAGAAAACGAACTTATGACCGTCAAACAAGGAGACATGAAGATAAGTCAATATTTCACTAAAGTTAAATCTAAATGTGGCGAAATCGCTAAATTAGATTCAGAGAGTGCAATAAACGAGGCAAGAATGCGTAGAATTATAATTCACGGGTTAGATCCTAAATACAATAGCCTCATTATTGCAACTCGTGGTTGGGCTAAAGAGCCTACCATAACTGAACTAGAAAATATCTTAGCCAACCAAGAAGAGTTGGACAAGCAAATGTCGGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_398574.p1 GENE.S_Transcript_398574~~S_Transcript_398574.p1 ORF type:3prime_partial len:197 (-),score=15.66,UBN2_3|PF14244.2|9e-17,DUF4219|PF13961.2|4e-09,DUF4219|PF13961.2|6.1e+02,Retrotrans_gag|PF03732.13|4.6e-06 S_Transcript_398574:2-589(-)
MADLVNSASTLEKLNGSNYSTWNIRIKYYLLGQDLWSIVGGEDTTPPSDDTEKKQGKIKTGKVMYILSVTVEDEYLERIKDLQTPKEAWDTSEALFTKKNYAKLQQLENELMTVKQGDMKISQYFTKVKSKCGEIAKLDSESAINEARMRRIIIHGLDPKYNSLIIATRGWAKEPTITELENILANQEELDKQMSG

Click here to download the sequence:
Link to NCBI Protein BLAST