Transcript Information: S_Transcript_398580.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value6E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.17478006749786
Replicate 30.16653005941392
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_398580.p1 GENE.S_Transcript_398580~~S_Transcript_398580.p1 ORF type:3prime_partial len:128 (+),score=3.83,UBN2|PF14223.2|7.9e-09 S_Transcript_398580:432-812(+)
ATGTACGTATATTCTGTCACAGTGGAGGACGAGTACCTGCAGTGGATAAAAGATTTGAAAATCCTGAAGGAAGCATTATTTACAAAGAAGAATGATGCTAAATTGCCGCGGCTAGAAAACGAACTTATGACCGTCAAACAAGAAGACATGACGGTAAGTCAATATTTTACTAAAGTTAAATCTATATGTGGCGAAATCGCTAAATTAGATTCAAAGAGTGCAATAAACGAGGCAAGGATGCGGAGAATTATAATTCATGGGTTAGACCCTAAATACAATAGCCTCATTATTGCAACTCGTGGTTGGGCTAAAGAGCCTACCATAACAGAATTAGAAAATATCTCGGCGAACCAAGAAGAGTTGGACAAGCAAATGTCGGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_398580.p1 GENE.S_Transcript_398580~~S_Transcript_398580.p1 ORF type:3prime_partial len:128 (+),score=3.83,UBN2|PF14223.2|7.9e-09 S_Transcript_398580:432-812(+)
MYVYSVTVEDEYLQWIKDLKILKEALFTKKNDAKLPRLENELMTVKQEDMTVSQYFTKVKSICGEIAKLDSKSAINEARMRRIIIHGLDPKYNSLIIATRGWAKEPTITELENISANQEELDKQMSG

Click here to download the sequence:
Link to NCBI Protein BLAST