Transcript Information: S_Transcript_398826.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.37588984795453
Replicate 20.1869727928603
Replicate 30.20839249811978
Condition 2: 8 Hour
Replicate 10.30120607792561
Replicate 20.315986562708
Replicate 30.24085703508453
Condition 3: 24 Hour
Replicate 10.24683484170163
Replicate 20.25608826639941
Replicate 30.28499485203521


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_398826.p1 GENE.S_Transcript_398826~~S_Transcript_398826.p1 ORF type:5prime_partial len:354 (+),score=59.06,UBN2|PF14223.2|4.5e-16,UBN2_3|PF14244.2|6.9e-16,UBN2_2|PF14227.2|2e-07 S_Transcript_398826:3-1064(+)
ATCAAAGCATACGGTCCTTCTCTCAAGTTTTTTTTTCCTCTACTTCTTGCTTCTTCCTTACTGCTCATCATGACAAACTCTGATGATCAAGCTCTTATCTCCAACTCCAACGACCCCACAAAGCCCTTTACTGTTCTTCATTTTCATAATGCTATTAAGCTTACTCCTAATAATTATATTGCTTGGAAAACTCAAATTCAAGCCACATTACTGGGTTATGATCTATACAAATATGTTGATGGCTCTTTTCCTTCTCCATCCACGACAATTACTGGTACCGTGCAAGATAATTCTGCCTTTATTCCTTGGTTTCGTCAAGATCGCCTTGTTTTTGGTGCTCTTGTTGGTACCTTAAGCCAAGAACTTGTCCCTCTTATCTCTCAGTCTGGTACAGCCTGTGAAGCTTGGAATATTCTTGCCTCCACCTATGCCAACCCATCACGTGGTCACTTCAAGCAGATCAAGGATCGTTTGGCCAAAATAACCAAAACGACTCAAAGTATCTCTGAGTATATGCAGTCCATTAAGCAATGTACTGATCATCTAGCTTCAATGGGGAAACCTATGGATCATGAAGATATTATTGATAAAGTACTTCATGGTCTTGATTATGATACCTACAAACCTGTGATTGATGCGGTTGATGCAAGGGATTCTCCCATTTCCTTTGAGGAGATCCATGAAAAGCTTATTACCAGAGAACTCATGAATTCCTCAATGAGAACAACTAGTCCTTTTCCCGCTACGGTTCATGCTGCCACATACCGTCAGTCTAGCAGCACTTCTCGGTCTCCGCAGTCTTTTAATAGGGCTGCTCCAGCCCTTCTTCCTACTCCACAGGGTGCACAGCCTCCACGACAGCCACGCCCCTATCTTGGCAAATGTCAGTTTTGCCGTACTCAAGGTCATGCTCTTGATCAATGTCCTATGTTCAAGGCTCGGTATCCTAATGTTCAAGTGCCTACCGTTGGTCAGGCACGGGCTGCCCAAAAAGGGTTTCAGTCTCCTCAGGCTCATCTTGTCACTAGTGACATTCGTTCGCCGTCAAATGGGTGGCTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_398826.p1 GENE.S_Transcript_398826~~S_Transcript_398826.p1 ORF type:5prime_partial len:354 (+),score=59.06,UBN2|PF14223.2|4.5e-16,UBN2_3|PF14244.2|6.9e-16,UBN2_2|PF14227.2|2e-07 S_Transcript_398826:3-1064(+)
IKAYGPSLKFFFPLLLASSLLLIMTNSDDQALISNSNDPTKPFTVLHFHNAIKLTPNNYIAWKTQIQATLLGYDLYKYVDGSFPSPSTTITGTVQDNSAFIPWFRQDRLVFGALVGTLSQELVPLISQSGTACEAWNILASTYANPSRGHFKQIKDRLAKITKTTQSISEYMQSIKQCTDHLASMGKPMDHEDIIDKVLHGLDYDTYKPVIDAVDARDSPISFEEIHEKLITRELMNSSMRTTSPFPATVHAATYRQSSSTSRSPQSFNRAAPALLPTPQGAQPPRQPRPYLGKCQFCRTQGHALDQCPMFKARYPNVQVPTVGQARAAQKGFQSPQAHLVTSDIRSPSNGWL*

Click here to download the sequence:
Link to NCBI Protein BLAST