Transcript Information: S_Transcript_39887.p2


Annotated TAIR IDAT5G22920.1
Annotated Gene NameCHY-type/CTCHY-type/RING-type Zinc finger protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:7665143-7667031 | Forward length=291
E-Value2E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.3483660126991
Replicate 24.2808397648909
Replicate 39.3590004006331
Condition 2: 8 Hour
Replicate 12.8646046694656
Replicate 24.3408064524843
Replicate 35.40849864604
Condition 3: 24 Hour
Replicate 11.9562582230383
Replicate 23.8900572108656
Replicate 32.8233631796772


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_39887.p2 GENE.S_Transcript_39887~~S_Transcript_39887.p2 ORF type:3prime_partial len:134 (+),score=12.83,zf-RING_2|PF13639.2|2.9e-07,zf-RING_2|PF13639.2|3.3,zf-RING_2|PF13639.2|1.5e+02,zf-C3HC4_2|PF13923.2|2.8e-06,zf-C3HC4_2|PF13923.2|1.6e+04 S_Transcript_39887:1136-1534(+)
ATGAGGGGTACACATAAGTGCTTGGAGAAAGCAATGCATCATAATTGCCCAGTTTGTTGTGAGTATCTATTTGATACAACGAAGGAAGTCAGCATACTTCCTTGTGGGCATACAATGCATTTGGAATGCACTAAGCAGATGGAGCAGCACTACCGGTATGCATGTCCTATTTGCTTGAAGTCTTTGTGTGATATGTCGAAAGTCTGGAGAAAGCTAGAAGAAGAGATTGCTTCTACGCCATTGCCTGAGGTGTGCCAGAGGATGGTAAGTAATGGCATCATTTTGTTTGAAGATTCACAATGTTTCTGTTTGTGCTCTCTAAATCGGTTTCATTGTGGACATTATAGGTGCGGATTCTCTGCAATGATTGTGAGGCCAATTCCGAAGTCCAATACCATG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_39887.p2 GENE.S_Transcript_39887~~S_Transcript_39887.p2 ORF type:3prime_partial len:134 (+),score=12.83,zf-RING_2|PF13639.2|2.9e-07,zf-RING_2|PF13639.2|3.3,zf-RING_2|PF13639.2|1.5e+02,zf-C3HC4_2|PF13923.2|2.8e-06,zf-C3HC4_2|PF13923.2|1.6e+04 S_Transcript_39887:1136-1534(+)
MRGTHKCLEKAMHHNCPVCCEYLFDTTKEVSILPCGHTMHLECTKQMEQHYRYACPICLKSLCDMSKVWRKLEEEIASTPLPEVCQRMVSNGIILFEDSQCFCLCSLNRFHCGHYRCGFSAMIVRPIPKSNTM

Click here to download the sequence:
Link to NCBI Protein BLAST