Transcript Information: S_Transcript_39920.p1


Annotated TAIR IDAT3G60510.3
Annotated Gene NameATP-dependent caseinolytic (Clp) protease/crotonase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:22357141-22360003 | Reverse length=426
E-Value2.6E-72
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1060648459495
Replicate 22.8570518851458
Replicate 31.9902233183742
Condition 2: 8 Hour
Replicate 12.4547211875837
Replicate 21.9313826163793
Replicate 33.5270826972271
Condition 3: 24 Hour
Replicate 12.9859912684985
Replicate 22.119637053903
Replicate 32.7218033530701


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_39920.p1 GENE.S_Transcript_39920~~S_Transcript_39920.p1 ORF type:5prime_partial len:139 (+),score=24.05,ECH_2|PF16113.1|2.8e-53,ECH_1|PF00378.16|7.6e-15 S_Transcript_39920:2-418(+)
GGCAGGGCTTTTTGTGCTGGCGGAGACATTGTTTCTCTTTATAATAAACTCAATGCAGGAAGAATAGAAGACTCAAAAGAGTTTTTTCGAACATTATATACATATATATACATACTTGGAACTTATTTGAAGCCACATGTGGCTCTTTTGAATGGCATTACTATGGGTGGCGGTGGAGGTGTTTCAATCCCAGGAACATTTCGTCTTGCAACAGACAAAACTGTTTTTGCGACCCCGGAAACTATCATTGGGTTTCATCCTGATGCTGGTGCCTCTTTCTATCTTTCACATTTACCTGGATACATTGGGGAGTATTTGGCTCTGACTGGCGAAAAACTCAGTGGTGCTGAAATGCTTGCTTGTGGGCTCGCAACACATTTTTCACTTAGTGCTGTCTGTTCTGCTGAACCTTCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_39920.p1 GENE.S_Transcript_39920~~S_Transcript_39920.p1 ORF type:5prime_partial len:139 (+),score=24.05,ECH_2|PF16113.1|2.8e-53,ECH_1|PF00378.16|7.6e-15 S_Transcript_39920:2-418(+)
GRAFCAGGDIVSLYNKLNAGRIEDSKEFFRTLYTYIYILGTYLKPHVALLNGITMGGGGGVSIPGTFRLATDKTVFATPETIIGFHPDAGASFYLSHLPGYIGEYLALTGEKLSGAEMLACGLATHFSLSAVCSAEPS*

Click here to download the sequence:
Link to NCBI Protein BLAST