Transcript Information: S_Transcript_39947.p1


Annotated TAIR IDAT4G00800.1
Annotated Gene Nametransducin family protein / WD-40 repeat family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:337114-345581 | Reverse length=1913
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.7487625577293
Replicate 211.693278465483
Replicate 310.822974070113
Condition 2: 8 Hour
Replicate 115.792012724319
Replicate 214.942039959902
Replicate 314.55087070719
Condition 3: 24 Hour
Replicate 113.98072543398
Replicate 211.57047222582
Replicate 312.518098881065


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_39947.p1 GENE.S_Transcript_39947~~S_Transcript_39947.p1 ORF type:complete len:1900 (+),score=364.13,Vps8|PF12816.3|6.5e-54,Vps8|PF12816.3|8.8e+02,Vps8|PF12816.3|32,Clathrin|PF00637.16|6e+02,Clathrin|PF00637.16|0.48,Clathrin|PF00637.16|1.6e+03,Clathrin|PF00637.16|2.1e-08 S_Transcript_39947:114-5813(+)
ATGACAAGAAACTACTCGTCAACGAAACCTCCGGTGTCGGAGCTCGACCTAGACTCCTTTCTCCGGCGCCACAACGCAGGCTCCGACGACGGCGACGACCACCTCCACCGTACTGTCGACGACATTCTCAACGACTCCGATTCCTCATCACCATCTCCCCCCTCCTCATCTTCATCACCGTCTTCGAGTCGCATTTCTCTCTCCTCTTCCAAAGACGATCCTCCTAATCGCGATGACAACACCTCAATTTCATCCTTCAAAACCCTAAATTCGACCGACAAACCCTCAACTTCCTCCCAATTGAAGTATAACCTAATCCAACGCCTGAAATCCGATGAATTTTTTACGAAGAAACCGCCGTTACGATCTCCGTCACTGTTTAGCGGCGGAGTTAGGTCAACGGCGAAACCTGGAGCCGCACTTGCTGCCGCAGCCGCCGCTTCGAGGTCTAAAACGACGTCGTTTTCTGCCGCGATTAAGTCGAGAAGAGCTTTGAGTGTTAGTTTGGACGGTAAGGTTTCTGATGGCGATGAAGTTTTTGCGTCTGTTAAAGATGACTTTACCGATCGTATTAGTCTCAGCGGTCAAGCTGATTTCAAGTCGGAGGCTAGTGATCGTAATGATAACGTTATTGAGCGAATTGAAGAGAGAAATTTTGAAGATCACAATACTGATTTTACGGAATCGGATGACCGCATTAAAGAAAATGGAGATAATGAGGTACAAATCGCTGAAATACAGACTGCAATCGATGAGGTTGATTCGAGTACAGAAGAAGAAAAAGAGAAACCTTCAGTTTCAATATCAGAAGATGTGGAGAAATCAGATAATGTGCAATCTGATTATAAAGAAGTTGAGTCTTTACTTGAATTCAAAAACGAGAGAATCACTGAGCAGGATGAAGAGAACTTTAGTTCGAGTTCCATAAGCGATCAAGTATCGGAGCTAGTTGAGGATAGAATTGCGCAATTAGAGAGTGAGAGGGCTATGAGAGAGGCTGAGGAGGAGGAGAAGAAGGTTCGAGTTCCAGCAAAGAAGCCGTTAGAATTAGCCGAAGAGGTGGAGAAAAAACAGGCTTCCACTGGTATGGACTGGGAGGAAGGAGCTGCTGCTCAACCTATGAGGCTTGAAGGTGTTCGGAGAGCTTCGACGGTTTTAGGATATTTTGATACTGATGATGATAATTCTATCACTAGAACTATCAAATCTCAGGCTTTTAGGCGCGATTATGGTATCCCACAGGTCTTGGCTGTGCATCTCAATTACATTGCTTTTGGGATGTCCAAAGGCGTTGTTGTTCTTGTTCCCAGTAAATATTCTGCTCATCAACCAGATATCATAGACACCAAGATGATGATGCTTCGTACACAAGGGGATAAATCCCAGGTCCCAGTGACGTCCATTTGTTTCAATCAACAAGGTGACCTCCTTTTCGCTGGTTATGGTGATGGTCATAGTACTCTTTGGCATATACCAAGGGGAACAATTGCGAAGGTTATTTCTGGAGAGCATACAGCACCTGTGGTACACACATTGTTTCTTGGGCAGGATCCTCAAGTTACTCGTCAGTTTAAAGCAGTTACTGGTGACAGTAAAGGCCTAGTACTGTTACATGAAATCTCTGTCATGCCATTGCTTGGTACCACAATCAAGACCCAGTGTCTTCTCGATGGACAAAGAACGGGCACAGTGCTATGTGCATCACCACTTCTTCCTGATGAGATTACTGGGGCTGCTCCACAAACTTCCCAAGGCAACAGCGCAGCCTCAGCTAGCAGCATAGGCGGTGTGATGGGGGGTGTAGTTGGGGGAGCTGCTGGGTGGAAACTCTTCAGTGAAGGTTCCTCCTTGTCTGAAGAAGGTGTGGTCATCTTTGTCACCCATCAGAATGCTCTGGTGGTGAGGCTTAGTCCCAGCTTGGAAGTCTATGCATCACTTCCTAAGCCAGATGGGATACGGGAGGGTTCTATGCCATACACCGCTTGGAAATGTACAATACAGAGTCATGGTTCTGCCTCAGAGAGTATGAATTCAGATGTGGAGAAGGTCTCACTTCTTGCAATCGCATGGGATCGGAAGGTTCAGGTCGCAAAGTTAGTGAAGTCAGACTTGAAGGCATGTGGAAAGTGGACACTTGATAGTGCAGCTATAGCTTTGGCATGGCTTGATGATCAGATGTTGGTAGTTCTTACATTAGCTGGACAACTTTGCTTGTTTACAAGGGATGGAGCCTTGATCCACCAGACTAGTTATGCAATTGATGGTTCTGGAGGAGATGACCTCATTGCTTATCACACTTATTTTACCAATGTATTTGGCAATCCTGAGAAAGCTTATCACAATAGCGTTGCTGTTAGAGGAGCGTCTGTGTATATACTAGGACCTATGCATTTTGTTGTCTCTCGTCTTCTTCCTTGGCAAGAACGAATTCTGGTTTTGCAAAAGGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACACTATATGATGGTCAGGCCCATGGTGTCATTGACCTCCCGAGAAACTTGCATGCCGTACAGGAGGCTATAATGCCCTATCTTTTGGAGTTGCTTTTCTCTTATGTAGATGAAGTTTTTTCATATATTTCGGTTGCAAGTGTCAATCAGATTGAAAAGGTGGAAGAATCGAATGGTTCCAAGAGTAGTACTTCTACATATTCTGAGATAAAAGATCAATTTATCCGTGTGGGTGGTGTAGCAGTCGAATTTTGTGTCCATATCAAAAGGACTGACATCCTCTTTGATGAGATCTTCTCAAAATTTGTAGCAGTTCAACATCGAGATACATTTTTGGAGCTTCTGGAGCCATATATATTAAAGGATATGCTTGGATCATTACCTCCTGAGATCATGCAAGCTCTGGTAGAACACTACAATAGCAAAGGGTGGTTGCAACGAGTAGAGCAATGCGTTCTGCACATGGATATTTCATCTCTGGATTTCAATCAGGTTGTTAGGCTTTGCCGGGAGAATGGATTGTATGGTGCCCTGATATACCTTTTTAACAAAGGTCTGGATGATTTTAAGACACCTCTGGAGGAACTCTTGAGTGTGCTAAGAAATCGAGAAAGAGATGCTGCTGCTGGTGTGGGGTACCGGATGTTAGTTTATCTGAAGTATTGCTTCTCAGGCCTTGCCTTTCCCCCAGGACACGGAACTCTCCCTTCAGAACGTTTGCCTTCTCTTAGGATGGAGCTTGTGCAATATCTGTTGGAGGATTCAGGTGGCCCAAAGTCACAGAGAGCTGCAAGCCTAACTTCCACAGGAGCATACCTGAACTTGCATTATTTACTAGAGCCGGATACAGAGGCTACGTTGGATGTTTTAAGGATTGCTTTTGGAGAACATGTGAATTTCAAGCCGGAAACAACGTTTGATCCAACTACTGATAATGCAAACAAGAATGACCCAATAACTGAAAATCAGGATACAATGGTTCAGAAAACAGTGGATGCTCTAGTCCTTATTCTTGATGTAGATATTTCTCAAACAATCAGATTGGCTGGCAGTGATGATACTGGGTCAGGAGTATGGCCTTCAAAAAAAGATATAGGCCACCTCATTGAGTTCATAGCAAGCTATGTCGCATCTAAAAGAGCCAACGTTTCAAAGAGCGTGTTAAGCCAGATATTGGAATACTTGACATCAGAGAATTGTCTCTTACCAAATGATTCCGAGGAGAAGAATATATCTAAGCGAAGAAGGGAGAAAAAGGTGCTTGCTCTTTTGGATGTGGTTCCTCAGACCGAGTGGAATGCCTCATATGTCTTGCATTTGTGTGAAGAGGCTCAATTTCACCAGGTTTGTGGTTTAATTCACACTATCAGACATCAGTATCTTGCTGCTCTGGATAGCTATATGAAAGATGTGGATGAACCAGTGCATGCATTTTCCTTCATCAATAGTATGTTACTGGAGCTGAATGAAATAGAATCTCTTCCTTTCCGTTCAGCAGTCATGTCCCGGATTCCCGATTTAGTCAGCTTGAACAGGGAATGTACATTTCACTTGGTCGTTAATCACTTCAACAAAGAAAGTGGACGCATTCTTTCTGATCTGAGATCTAATCCAAAAAGCCTCTTTCTTTATCTTAAGACAATTGTCGAGGTTCATTTATCAGGTACCCTTAAATTCTCCTGCATAGGGGCAGATGATATTGTCGAGGGTCCTTGTGGTGGAAGGTTGAAAGATGGGCGAACTTGGTTTGAGGCCTATCTGGAAAGGATTTCTGAATTTCCCAAGGTTCTACGTAATAGCCCAGTTGAAGCTACTGATGACATGATCGAACTTTATCTTGAGATGTTATGTCAGTACGAACCAGATTCAGTTCTCAAGTTCTTAGACACCTTCGAAAATTATAGAGTGGATCGTTGTTTACAATTGTGTCAAGAATATGGCATTGTTGATGCAGCTGCATTTCTGTTAGAAAGGGTTGGTGATGTTGGAAGTGCACTGGTTCTGATCCTTTCGGGCGTCAATGATAAATTTGTCATACTTGACACTGCTGTAGCAAGAATGGTTTCTGAGATGGCTGCACGCAAACATAATCCTCCTGTTGACTATTTTTCAGCTGCTTCAGGGTTGAAAGAGGTACGAGACATTAGGAAAATTCTGCAAGCATGTATTGGCCTCTGTCAACGAAATACTCCTCGTTTGGTTCCAGAAGAGTCAGAATCACTTTGGTTCCATTTGCTAGACTCGTTTTGTCAACCATTAATTAGTTCCAAGGGGAACTCTGGCATCTTCACTCAATCTTTGAGCTCTAAAGGTGATCAAGACATGAATGTTGTCACATGGAGGGTCCCTAAGAGCCAGAAATATGCTCCTGTACTCAAGAGATTAATTTCACAATTTGTTAAGGAGATTGTAGAGGAGATGATTGGATATGTTCGCCTTCCTTCTATCATGGCCAAACTGGTCTCAGATAATGGTACTCAGGAATTTGGTGATTTTAAGCTGACTATATTGGGAATGCTAGGAACATATGGCTTTGAAAGGAGGATCCTGGATACTGCCAAATCCTTGATAGAGGATGATACTTACTATACCATGAGTGTACTCAAGAAGGGGGCCTCAAAAGGGTATGCCCCTCGAAGTCTCCTATGTTGTATATGTAACTGCTCTTTCAGCGAGAATTCTTTTAGTTCTGGCGTCCGGGTGTTCACCTGTGGCCATGCAACCCATCTAGAGTGTGAAATCCAAGAGAATGGTACATCACATCAAAGCTCTAGCGGATGTCCCATATGTGTGCCTAAGAAGAAAAGCCAGAAAACTAAAGGTAAATTGATAGAACAAGGGTTGGTTGGCACATCTTCATCTAGATCAAGGCAAGCACATGGGAAATCTATGATTTACCAACATGAGCTGGATGCTTTTGATAACTTTTTTGCTTCTCATCAGATATCAAGATTTGAGATGTTGAATAGTCTCCAGAAGAACCAAAGATTGATCCGAACTGATACGATGCCTCAGTTGAGGTTAGCACCACCAGCTGTTTATCATGATAAAGTGAACAAAAGAAATCAGTTTTCAGCAGGTGCAAGTAGTGGAGGTCTGACAGATACAGAAAAGCCGAGTAAGAATGGGCAGCTTCGGGATGTTAGAGTGAAAGGTCCATCTATTCGGTTTCCACTGAAATCAAAAATTTTTGGCAGAGAGAAGACCCGTGTACAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_39947.p1 GENE.S_Transcript_39947~~S_Transcript_39947.p1 ORF type:complete len:1900 (+),score=364.13,Vps8|PF12816.3|6.5e-54,Vps8|PF12816.3|8.8e+02,Vps8|PF12816.3|32,Clathrin|PF00637.16|6e+02,Clathrin|PF00637.16|0.48,Clathrin|PF00637.16|1.6e+03,Clathrin|PF00637.16|2.1e-08 S_Transcript_39947:114-5813(+)
MTRNYSSTKPPVSELDLDSFLRRHNAGSDDGDDHLHRTVDDILNDSDSSSPSPPSSSSSPSSSRISLSSSKDDPPNRDDNTSISSFKTLNSTDKPSTSSQLKYNLIQRLKSDEFFTKKPPLRSPSLFSGGVRSTAKPGAALAAAAAASRSKTTSFSAAIKSRRALSVSLDGKVSDGDEVFASVKDDFTDRISLSGQADFKSEASDRNDNVIERIEERNFEDHNTDFTESDDRIKENGDNEVQIAEIQTAIDEVDSSTEEEKEKPSVSISEDVEKSDNVQSDYKEVESLLEFKNERITEQDEENFSSSSISDQVSELVEDRIAQLESERAMREAEEEEKKVRVPAKKPLELAEEVEKKQASTGMDWEEGAAAQPMRLEGVRRASTVLGYFDTDDDNSITRTIKSQAFRRDYGIPQVLAVHLNYIAFGMSKGVVVLVPSKYSAHQPDIIDTKMMMLRTQGDKSQVPVTSICFNQQGDLLFAGYGDGHSTLWHIPRGTIAKVISGEHTAPVVHTLFLGQDPQVTRQFKAVTGDSKGLVLLHEISVMPLLGTTIKTQCLLDGQRTGTVLCASPLLPDEITGAAPQTSQGNSAASASSIGGVMGGVVGGAAGWKLFSEGSSLSEEGVVIFVTHQNALVVRLSPSLEVYASLPKPDGIREGSMPYTAWKCTIQSHGSASESMNSDVEKVSLLAIAWDRKVQVAKLVKSDLKACGKWTLDSAAIALAWLDDQMLVVLTLAGQLCLFTRDGALIHQTSYAIDGSGGDDLIAYHTYFTNVFGNPEKAYHNSVAVRGASVYILGPMHFVVSRLLPWQERILVLQKAGDWMGALNMAMTLYDGQAHGVIDLPRNLHAVQEAIMPYLLELLFSYVDEVFSYISVASVNQIEKVEESNGSKSSTSTYSEIKDQFIRVGGVAVEFCVHIKRTDILFDEIFSKFVAVQHRDTFLELLEPYILKDMLGSLPPEIMQALVEHYNSKGWLQRVEQCVLHMDISSLDFNQVVRLCRENGLYGALIYLFNKGLDDFKTPLEELLSVLRNRERDAAAGVGYRMLVYLKYCFSGLAFPPGHGTLPSERLPSLRMELVQYLLEDSGGPKSQRAASLTSTGAYLNLHYLLEPDTEATLDVLRIAFGEHVNFKPETTFDPTTDNANKNDPITENQDTMVQKTVDALVLILDVDISQTIRLAGSDDTGSGVWPSKKDIGHLIEFIASYVASKRANVSKSVLSQILEYLTSENCLLPNDSEEKNISKRRREKKVLALLDVVPQTEWNASYVLHLCEEAQFHQVCGLIHTIRHQYLAALDSYMKDVDEPVHAFSFINSMLLELNEIESLPFRSAVMSRIPDLVSLNRECTFHLVVNHFNKESGRILSDLRSNPKSLFLYLKTIVEVHLSGTLKFSCIGADDIVEGPCGGRLKDGRTWFEAYLERISEFPKVLRNSPVEATDDMIELYLEMLCQYEPDSVLKFLDTFENYRVDRCLQLCQEYGIVDAAAFLLERVGDVGSALVLILSGVNDKFVILDTAVARMVSEMAARKHNPPVDYFSAASGLKEVRDIRKILQACIGLCQRNTPRLVPEESESLWFHLLDSFCQPLISSKGNSGIFTQSLSSKGDQDMNVVTWRVPKSQKYAPVLKRLISQFVKEIVEEMIGYVRLPSIMAKLVSDNGTQEFGDFKLTILGMLGTYGFERRILDTAKSLIEDDTYYTMSVLKKGASKGYAPRSLLCCICNCSFSENSFSSGVRVFTCGHATHLECEIQENGTSHQSSSGCPICVPKKKSQKTKGKLIEQGLVGTSSSRSRQAHGKSMIYQHELDAFDNFFASHQISRFEMLNSLQKNQRLIRTDTMPQLRLAPPAVYHDKVNKRNQFSAGASSGGLTDTEKPSKNGQLRDVRVKGPSIRFPLKSKIFGREKTRVQ*

Click here to download the sequence:
Link to NCBI Protein BLAST