Transcript Information: S_Transcript_399673.p1


Annotated TAIR IDAT5G42200.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16860523-16861014 | Forward length=163
E-Value4.4E-46
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.2202523964405
Replicate 28.1649693638047
Replicate 35.8087357743624
Condition 2: 8 Hour
Replicate 110.410820469782
Replicate 210.921689887111
Replicate 313.930829537114
Condition 3: 24 Hour
Replicate 13.6121460889959
Replicate 23.7475593945141
Replicate 34.9649693710859


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_399673.p1 GENE.S_Transcript_399673~~S_Transcript_399673.p1 ORF type:complete len:127 (+),score=1.82,zf-RING_2|PF13639.2|9.4e+03,zf-RING_2|PF13639.2|1.5e-13,zf-RING_11|PF17123.1|4.3e+03,zf-RING_11|PF17123.1|9.7e+03,zf-RING_11|PF17123.1|3.9e-10,zf-RING_11|PF17123.1|1.8e+03,zf-rbx1|PF12678.3|1.8e-07,zf-C3HC4_2|PF13923.2|4.1e+03,zf-C3HC4_2|PF13923.2|4.7e-07,zf-C3HC4_3|PF13920.2|7e+03,zf-C3HC4_3|PF13920.2|3.3e-06,zf-C3HC4|PF00097.21|9.2e-06,zf-RING_5|PF14634.2|1.1e-05 S_Transcript_399673:561-941(+)
ATGTTGCTGTCGATATTCCTGGCGTTGTTTCTGCCGTGCGCAGGGATGAGCGCCGTCTTCATGGTGTACATTTGTCTGTTATGGTACGCAGCGAGCCACGCGCCGCCGGAGCCCGTCAAGCCGGCGGCTAAAAAAGGCTTGTCGGCGGCTGAGCTTGAGAAGCTCCCTAAAGTAACCGGTAACCAGCTTGTCCTGGGTAATGAATGCGCTGTTTGTCTTGATGACATTGAAGCGGATGAACCGGCTAGAATGGTTCCCGGTTGTAATCATGGTTTCCACCTCCAATGTGCTGACACCTGGCTCGCTAAACAGCCTGTTTGTCCCGTTTGCCGTACTAAGCTTGGCCCTGATTTCTTCGACTCCAACAAAAACCCTTGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_399673.p1 GENE.S_Transcript_399673~~S_Transcript_399673.p1 ORF type:complete len:127 (+),score=1.82,zf-RING_2|PF13639.2|9.4e+03,zf-RING_2|PF13639.2|1.5e-13,zf-RING_11|PF17123.1|4.3e+03,zf-RING_11|PF17123.1|9.7e+03,zf-RING_11|PF17123.1|3.9e-10,zf-RING_11|PF17123.1|1.8e+03,zf-rbx1|PF12678.3|1.8e-07,zf-C3HC4_2|PF13923.2|4.1e+03,zf-C3HC4_2|PF13923.2|4.7e-07,zf-C3HC4_3|PF13920.2|7e+03,zf-C3HC4_3|PF13920.2|3.3e-06,zf-C3HC4|PF00097.21|9.2e-06,zf-RING_5|PF14634.2|1.1e-05 S_Transcript_399673:561-941(+)
MLLSIFLALFLPCAGMSAVFMVYICLLWYAASHAPPEPVKPAAKKGLSAAELEKLPKVTGNQLVLGNECAVCLDDIEADEPARMVPGCNHGFHLQCADTWLAKQPVCPVCRTKLGPDFFDSNKNPC*

Click here to download the sequence:
Link to NCBI Protein BLAST