Transcript Information: S_Transcript_40110.p1


Annotated TAIR IDAT3G48430.1
Annotated Gene Namerelative of early flowering 6
Annotated Gene Symbol(s)REF6
Annotation TypeOrtholog
Chromosome Positionchr3:17935609-17940456 | Forward length=1360
E-Value3.4E-252
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.13686695086
Replicate 27.5670541460495
Replicate 37.1974827482224
Condition 2: 8 Hour
Replicate 17.1636455828901
Replicate 27.8151482545269
Replicate 38.0780593958186
Condition 3: 24 Hour
Replicate 17.5385660034584
Replicate 26.9894747063259
Replicate 36.2832615913945


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_40110.p1 GENE.S_Transcript_40110~~S_Transcript_40110.p1 ORF type:complete len:1417 (+),score=336.90,JmjC|PF02373.18|6.6e-37,JmjN|PF02375.13|1.8e-14,zf-C2H2_4|PF13894.2|12,zf-C2H2_4|PF13894.2|0.057,zf-C2H2_4|PF13894.2|1.6e+02,zf-C2H2_4|PF13894.2|3.1,zf-C2H2|PF00096.22|3.2e+03,zf-C2H2|PF00096.22|6.5,zf-C2H2|PF00096.22|0.08,zf-C2H2|PF00096.22|72,zf-C2H2|PF00096.22|0.086 S_Transcript_40110:313-4563(+)
ATGGGCAGTTCAAGTGTAACAGCAGAGTATGCAAACCCTGAGGTTTTCAGTTGGCTAAAAACCCTACCTGTAGCACCAGAATATCACCCAACAATCCAAGAATTCCAAGATCCAATTGCTTACATTTTCAAGATTGAAAAAGAAGCCTCTAAATATGGGATTTGTAAAATAGTCCCTCCTTTACCCCCTCAATCTAAAAAGTCTGTAATTTCCAACTTCAATCGTTCCCTTTCTTTAACAAACCCTAATTCTTCACAACCCACATTCACCACAAGGCAACAACAAATAGGGTTTTGCCCAAGAAAGCAAAGACCCATTCAGAAATCTGTGTGGCAGAGTGGTGAAACTTATACTCTTCAACAGTTTGAGTCTAAAGCTAAGAGTTTTGAGAAGAGCTACTTGAAAAACAGGACAAAAAAGAGTTTATCACCACTAGAAGTTGAAACCCTTTATTGGAAAGCAAATGGGGATAGACCCTTTTCAGTTGAGTATGCAAATGACATGCCTGGCTCTGCTTTTGTTCCTATGAAGGATAAAAAAACAGGGGAACTTGTGTCTGGTGGGGCCAATACTGTTGGGGATACTGCTTGGAATATGAGGGGAGTTGCTAGGGCTAACGGGTCTTTGTTGAGGTTTATGAAGGAAGAGATTCCTGGGGTTACATCTCCTATGGTTTATGTTGCTATGATGTTTAGCTGGTTTGCTTGGCATGTTGAGGACCATGATTTGCATAGCTTGAATTACTTGCATTTAGGGGCTGGTAAGACCTGGTATGGGGTCCCTCGTGACGCTGCTCCCGCCTTTGAGGAGGTCATCAGGGTTCATGGCTTTGCCGAAGAGATCAACCCCCTTGTTACTTTCGCAACACTTGGAGAGAAGACTACGGTTATGTCGCCTGAAGTACTTATTAACGCGGGAGTACCCTGTTGCAGGTTAGTGCAAAATGCAGGGGAGTTTGTTGTCACTTTTCCACGGGCTTATCATTCAGGCTTTAGTCATGGGTTCAATTGTGGAGAAGCGTCTAATATTGCAACTCCTGAATGGTTGAAGTTTGCGAAAGATGCTGCTATTCGTAGAGCCTCGATAAATTATCCACCTATGGTCTCCCATTTCCAGTTACTCTATGATCTGGCATTAGCAATATGTTCAAGGGTGCCGATGGGTAGCACTGCTGAACCCAGAAGTTCTCGGCTAAAAGATAAGAAGAAGGGTGAAGGGGAAACGTTGGTCAAACAGATGTTTGTGCAGGATGTAATGCAGAATAATGAACTTCTTTACACTCTTGGGCAAGGATCTGAAGTTGTACTTCTCCCTCATAATTCTTCTGAAAAATTTGTCTGGTCCAACCTGCGTGTTGGGTCCAAGTATAAAGTGAAACCTGGATTGCCTTTTAGTTTATATAGTTCAGAAGAAGCAATTAAAGCTTCTGATGACATCATGTTAGCTAGAAATGTTAAGCATCCGAAACCGTCTTGTTCAGTTAAAGGAAAGATCGGCTCCATGAGTCAAAAGGCTGGATTTTCATCTCAGATTAGCAGTGGTAGTATGGGCACTTTGTCGCATGCCTCACAGTACTCAGAAACTGAAAAGGGGGGAGGTTCAGGGGGTGATGGATTATCAGAGCGTGGGTTGTTCTCTTGTGTGAAATGTGGTATCTGGACATTTGCTTGTGTTGCCATCGTTCAACCTACTGAGTCTGCTGCCCAGCACCTGATGTCAGCAGAATGTAGCTTCTTTAATGATTGGGTTGCTGGTTCTGGATTGTCGAGTCATGGAATTGATGCGACTGACGCTGAAGCAAATCACTCAGACCCAGATTCCTTTTCAGGATCGATGGAAAAGAATGCCCCTGATGGGTTGTATGATGTCCCAGTGCAGTCTAATGATTGCAAGCAAAGCATGGATAACATCTCCATGGTGAAGTCAGCTACTGCCGAAAGTATTAAGATGGGTTCATATGATGAAAGAAAGACCTCAGCTCTTGGGTTGTTAGCTATGACATATGGAAACTCTTCTGACTCTGATGAAGATGATGAGCCACCCAATTGTGCTGTTGCTACTGAGGATAACATATCTGGAGATGGTTCATGGGGTGCTAGATTTCACCGTGTTGATTCTATATCACCTACTTCTGAGCAAGCCTATGATAGTGGTTTGGAAAGGGGTCCAAGCCATGTTTCTTCGAGATCGGAATGTGAGGATGAAGAGTCTCCCCGGAGACTTGACTTGTATGGGCACTGTGTGCCCGAAAGAGCTAATAGTGATGATAGTGGATACGAAGTTCATGACTGCTCTGCCAAATTTGCAGAAGAGGATACCATGACTTCAGAACAAAATTATTCTCAGACCTATTCCCCTGCTGCTGATGAAAGTAATGCTGGAAAGATTAGCAATGCTATTGACTCAGTTGGCAAGCCAAATTTTCCCTTCCTTCACAGACGTGATGAAGATTCTTCAAGAATGCATGTTTTTTGTCTAGAGCATGCTGTGGAGGTTGAGAAACAACTACGACCATTTGGTGGGGTGCATATCCTACTTCTTTGTCATCCAGACTATCCAAAAGTACAGATTGAAGCAAAGAAGGTGGCAGAAGAGTTGTGCATGGATTATGTTTGGAAAGATATTCCTTTCTCTGAGGCCACCAAAGAAGACGAAGAGCAAATTAAATTGGCACTGCAGAGTGAGGAGGCCACACCGAAAAATGGGGATTGGGCTGTAAAGTTGGGCATCAACCTCTTTTACAGTGCTCTCCTCAGCCGCTCGCCCCTGTACAATAAGCAGATGCCATATAACTCTGTCATATACAGTGCTTTTGGCTGTAGTTCTCCATCTAAATCTTCCCCAGAAACCCATCCCCGTGGCAGGGGGTTTGGTCGGCAGAAAAAATTGGTGGTGGCTGGTAAATGGTGTGGTAAAGTGTGGATGTCAAACCAAGTTCATCCTTTGTTAGTACAAAGAGATCTGGATGGAGAGGAAAGAACTCTAAATGTTGCTTTTAAGGCAGATGAGAATTTTGGGAGAAAATCAGAAAGTAGCAAGAAAGCTCAAACCATCGCTACATACAGAAGGATTGGGCGGAAGAGAAAACTGACAGCAGAGAGTAGGTCCGTAAAGAAACTGAAATTTGAAGCCAGAGAATTTGCAGATACTGATCCTGAAGATTCAGTGGATGATAAGCCTGCCTTTGAACCTAGGAGGAGTGTCAGAAAATCAAAAGCACTCTACAGACCAATCAAGAAAGTGAAACACCAAGAAGAGGAAATCCCAGAGAGTGGCTCAGAAGAATCTCTTGATGATAAACCTCAACCAGGACCCTGGAGAAGTGGTAGATCATTGAGGCCAGCGGGTAAACCAATCCAGAAAGTGAGAGACCAACAAAGGGAAACCATGGATAGTTATTCTGACGATTCAATGGATGATAGGGCTCATCATGGACTGCGGACTGGCAAGAGAACAATAAAGGCCGAAGTGGTTAGGTCTTCCAGAAAGGTGAAAGGCCAACAGAAAGAGATTGTGGAAAGCGAGTCTGAAGGTTCACCAGATGATGTATCTGATCACGAGCATGCAAGGATTATCAGGAGTCCACAATCAGATCTGGGAACTCCTCCATGGCGAGTGTCCAAACAGTTTGAACCAGTCACTGATGATGAGATGGAAGGTGGGCCAAGCACCCGTCTCCGAAGAAGAGCAGCAAGGCCTTCTCAGGAGATAGAAACTAAACCAACAGTGAAGAGGCAGGGACCGAAAACCAAAGGAAAGAAAACTCCAGGCACAAAGAATCCTCCAGCAAGAAAGGGTCCAAAGATGAGGCTTCCAAGAGCTCCAGCAATGAAGGGTCCAGCCAAGAAAGATCCCTCTAACTCTAGTGATGCGGATCTGGAGGAAGAAGAAGCTGAATTTGCCTGTGACATTGAAGGGTGCTCCATGAGTTTCGGGTCAAAGCAAGAGCTTGCTTTGCATAAACGCAATGTGTGCCCAGTCAAGGGATGTGGTAAGAAGTTCTTTTCACACAAATATCTGGTGCAGCACAGGCGCGTCCACATGGATGACCGGCCTCTGAAATGTCCTTGGAAGGGGTGCAGAATGACCTTCAAATGGGCATGGGCACGGACTGAACATATAAGGGTCCACACAGGAGCCCGTCCATATGTCTGCAATGAGCCAGGTTGTGGGCAAACATTCCGGTTTGTCTCAGATTTCAGTCGTCACAAGCGGAAGACTGGTCACTCGGTGAAGAAGGCTAGAAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_40110.p1 GENE.S_Transcript_40110~~S_Transcript_40110.p1 ORF type:complete len:1417 (+),score=336.90,JmjC|PF02373.18|6.6e-37,JmjN|PF02375.13|1.8e-14,zf-C2H2_4|PF13894.2|12,zf-C2H2_4|PF13894.2|0.057,zf-C2H2_4|PF13894.2|1.6e+02,zf-C2H2_4|PF13894.2|3.1,zf-C2H2|PF00096.22|3.2e+03,zf-C2H2|PF00096.22|6.5,zf-C2H2|PF00096.22|0.08,zf-C2H2|PF00096.22|72,zf-C2H2|PF00096.22|0.086 S_Transcript_40110:313-4563(+)
MGSSSVTAEYANPEVFSWLKTLPVAPEYHPTIQEFQDPIAYIFKIEKEASKYGICKIVPPLPPQSKKSVISNFNRSLSLTNPNSSQPTFTTRQQQIGFCPRKQRPIQKSVWQSGETYTLQQFESKAKSFEKSYLKNRTKKSLSPLEVETLYWKANGDRPFSVEYANDMPGSAFVPMKDKKTGELVSGGANTVGDTAWNMRGVARANGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHLGAGKTWYGVPRDAAPAFEEVIRVHGFAEEINPLVTFATLGEKTTVMSPEVLINAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEASNIATPEWLKFAKDAAIRRASINYPPMVSHFQLLYDLALAICSRVPMGSTAEPRSSRLKDKKKGEGETLVKQMFVQDVMQNNELLYTLGQGSEVVLLPHNSSEKFVWSNLRVGSKYKVKPGLPFSLYSSEEAIKASDDIMLARNVKHPKPSCSVKGKIGSMSQKAGFSSQISSGSMGTLSHASQYSETEKGGGSGGDGLSERGLFSCVKCGIWTFACVAIVQPTESAAQHLMSAECSFFNDWVAGSGLSSHGIDATDAEANHSDPDSFSGSMEKNAPDGLYDVPVQSNDCKQSMDNISMVKSATAESIKMGSYDERKTSALGLLAMTYGNSSDSDEDDEPPNCAVATEDNISGDGSWGARFHRVDSISPTSEQAYDSGLERGPSHVSSRSECEDEESPRRLDLYGHCVPERANSDDSGYEVHDCSAKFAEEDTMTSEQNYSQTYSPAADESNAGKISNAIDSVGKPNFPFLHRRDEDSSRMHVFCLEHAVEVEKQLRPFGGVHILLLCHPDYPKVQIEAKKVAEELCMDYVWKDIPFSEATKEDEEQIKLALQSEEATPKNGDWAVKLGINLFYSALLSRSPLYNKQMPYNSVIYSAFGCSSPSKSSPETHPRGRGFGRQKKLVVAGKWCGKVWMSNQVHPLLVQRDLDGEERTLNVAFKADENFGRKSESSKKAQTIATYRRIGRKRKLTAESRSVKKLKFEAREFADTDPEDSVDDKPAFEPRRSVRKSKALYRPIKKVKHQEEEIPESGSEESLDDKPQPGPWRSGRSLRPAGKPIQKVRDQQRETMDSYSDDSMDDRAHHGLRTGKRTIKAEVVRSSRKVKGQQKEIVESESEGSPDDVSDHEHARIIRSPQSDLGTPPWRVSKQFEPVTDDEMEGGPSTRLRRRAARPSQEIETKPTVKRQGPKTKGKKTPGTKNPPARKGPKMRLPRAPAMKGPAKKDPSNSSDADLEEEEAEFACDIEGCSMSFGSKQELALHKRNVCPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCRMTFKWAWARTEHIRVHTGARPYVCNEPGCGQTFRFVSDFSRHKRKTGHSVKKARK*

Click here to download the sequence:
Link to NCBI Protein BLAST