Transcript Information: S_Transcript_401836.p1


Annotated TAIR IDAT5G05800.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:1743234-1744751 | Reverse length=449
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.2063856909856
Replicate 21.329083708284
Replicate 32.8886213142989
Condition 2: 8 Hour
Replicate 13.3401213749726
Replicate 25.6603472461959
Replicate 34.6227139384297
Condition 3: 24 Hour
Replicate 14.2110618777049
Replicate 26.2803333283854
Replicate 33.3426805838106


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_401836.p1 GENE.S_Transcript_401836~~S_Transcript_401836.p1 ORF type:5prime_partial len:83 (-),score=10.41,Myb_DNA-bind_3|PF12776.3|1.2e-10 S_Transcript_401836:66-314(-)
AATATTCAAGCTCCTCGTCCTTCAAAACAATCTCAATCATCACAAAGCTGTTCTCAGATGTCTAAATTGGTAGTGAAGAAAGAGAAGGCCTGTTGGGATGATTTTACTACTAGGATTTTTTGTCAAGTGTGTGCCGAGCAAGTCCATTTGGGGAATAGACCTCATACACATTTTAACAAGGAAGGATGGAAGAATGTGATTAATAACTTTGCACTAAGGACAAACAGAAGTATTCATATTTGCAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_401836.p1 GENE.S_Transcript_401836~~S_Transcript_401836.p1 ORF type:5prime_partial len:83 (-),score=10.41,Myb_DNA-bind_3|PF12776.3|1.2e-10 S_Transcript_401836:66-314(-)
NIQAPRPSKQSQSSQSCSQMSKLVVKKEKACWDDFTTRIFCQVCAEQVHLGNRPHTHFNKEGWKNVINNFALRTNRSIHICS*

Click here to download the sequence:
Link to NCBI Protein BLAST