Transcript Information: S_Transcript_401958.p1


Annotated TAIR IDAT3G26350.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:9653660-9654730 | Reverse length=356
E-Value7.5E-73
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.21462097770307
Replicate 20.23723429631736
Replicate 30.14873174260968
Condition 2: 8 Hour
Replicate 10.17197895417043
Replicate 20.30069689031891
Replicate 30.22920266241915
Condition 3: 24 Hour
Replicate 10.11744561016449
Replicate 20.2436968986704
Replicate 30.13560238927482


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_401958.p1 GENE.S_Transcript_401958~~S_Transcript_401958.p1 ORF type:complete len:372 (+),score=30.49 S_Transcript_401958:79-1194(+)
ATGTCGGATGATGGGGAAACCAACCCACATTTTCAGCAACGGCCAGGGCCGGATTATCCACCTATCGAACCAGAACCTGTCCGGTCATGGGGACACCATCCCCACCCTCATCCCTATCCTCATTCTTATCAGCCTGATCAAATTCCACAGCCAAGTAGGATCAAGCGAAAGCCTCGGCAATCAGACTCCCGGCCAGCACTGGTGACACCCCGCCCAAGGAGCCCGCCTGAACATGCTCGGCAACCATCATTGGCTCCCCCAAGGCGAGATCAGCCACGCCCAGAATCCTATACTGTTGGGGTGCCACAAGTACAACAGCCTCAACCTCACCCACAATCCTACCCAGTAGAGGTGACATCAGTACAACAGCCCCAACCTCACCCACAATCATACCCAGTAGAGGTGCCATGGGTACAACAGCCACAATTTCGCCCTGAGCGCCAGGCTCACCCCAAGCCACAACCACATCGGAACCAGCCCCACCATGGGAGTTACGAATATGGGGTTCCCCCACATCGACAGAACCTCATGTACCCGAAAACAAGCAAGACCAAACCTCTGACATGGTTTGGAGCAGTGTTCTGTGTCATCCTGTGGCTTGTCATAATTCTCGGAGGCCTCCTTGTGCTAGTGATATACCTCATGTACCGCCCCAGGACACCACATTTCGAGATATCTACTGCAAGCCTCAATGCTGCCTATCTCGATGTGGGCTATCTCCTAAATGCTGACCTGACATTGCTAGCCAACTTCACTAATCCTAACAAGAAGGTCAATGTCGACTTTAGCTATGTGATCCTCCAGCTATACTTTGATCGACACCTCATTTCTAATCAGTACATTGAGCCTTTCTCTGCTTTCAATACAGAGTCCAAACTTGCCAATGTGGAAATGGTAAGCAGCCAGGTTAGACTTCCTCTTGTCGTGACCCAAAAACTCATAAACGCTATACAGAGAAACAGGATTGTGTTTGAAGTTGATGGAATCTTTCATGCAAGATCAAATTTTGGGAGCCTTCTAAGGTATTCTTATTGGCTATATGCACATTGCCAAATTGAAATGACAGGGCCTCCAACAGGAATCATGTTAGCAAACAAATGTAGAACAAAGGACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_401958.p1 GENE.S_Transcript_401958~~S_Transcript_401958.p1 ORF type:complete len:372 (+),score=30.49 S_Transcript_401958:79-1194(+)
MSDDGETNPHFQQRPGPDYPPIEPEPVRSWGHHPHPHPYPHSYQPDQIPQPSRIKRKPRQSDSRPALVTPRPRSPPEHARQPSLAPPRRDQPRPESYTVGVPQVQQPQPHPQSYPVEVTSVQQPQPHPQSYPVEVPWVQQPQFRPERQAHPKPQPHRNQPHHGSYEYGVPPHRQNLMYPKTSKTKPLTWFGAVFCVILWLVIILGGLLVLVIYLMYRPRTPHFEISTASLNAAYLDVGYLLNADLTLLANFTNPNKKVNVDFSYVILQLYFDRHLISNQYIEPFSAFNTESKLANVEMVSSQVRLPLVVTQKLINAIQRNRIVFEVDGIFHARSNFGSLLRYSYWLYAHCQIEMTGPPTGIMLANKCRTKD*

Click here to download the sequence:
Link to NCBI Protein BLAST