Transcript Information: S_Transcript_402073.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.12553302469425
Replicate 20.62441857238249
Replicate 30.26098211439057
Condition 2: 8 Hour
Replicate 10.80473171008049
Replicate 20.58040173357781
Replicate 30.40218580386757
Condition 3: 24 Hour
Replicate 11.081939984204
Replicate 20.42761908634618
Replicate 30.1189719075713


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_402073.p1 GENE.S_Transcript_402073~~S_Transcript_402073.p1 ORF type:3prime_partial len:424 (+),score=84.84,UBN2_3|PF14244.2|2.8e-42,Retrotrans_gag|PF03732.13|4.5e-10 S_Transcript_402073:482-1750(+)
ATGATGACATCTTCTTCGAGTAACTCAAATTTGAATTCTACACAAACAACAATTGATGTGAATAATGAACTCTATATTCATCACTCAGATGTTTCTCATAATTTTACTCTTGCAACAAGGAAGTTTAATGGAGACAATTATGGAGAGCGGAAAAGGTCTGCAGAAATCACATTGAGTGCCAAGAACAAGCTCGGATTTGTCAAAGGAACTTGCAAGAAACCTGATTCTACTTCTCCTCTACTAAGTCATTGGGAGAGATGCAATAATTTGGTAATTTCCTGGATTTTACACTCTGTTGAACCTGAAATTGGTAGGAGCATTTTGTACTATACTACAGCTGCTGAAATTTGGACTGAATTACATGATAGATACTCTCATTCAAATGCGCCTAGAAAATATCAAGTACATAATCACATTGCTTCAATTGCTCAAGGAAATAGGACTGTGACAGAATATTATACTGAATTGAAAACATCTTGGGATGAATACATGTCCTTGTTTAATCTGTCTGCTTGCACTTGTGGTAGTGGTAATGCCTTTATGGACATTTTACAAGAACAACAATTGCTTCAGTTTCTTTTAAAGTTGAATGATGATTTCAAGACTGCAAGAGGAAATATTCTCATGAGGCAGCCTTTACCTACCTTAAGTCATGCCTATAGATTGATATTACAAGAAGAGAAACAAAGAGAATGTTCTCATTCTTTTTCACTTGGTTCTGACTCTGCTGCTTTGGTTGCTCGAAATGGGAATGGTAATTTTAGACCACATTTTCCCGGTAATAAGTCTACTAATCCTAGATGGAATTCTGGAAAACAAAACTCATCTACTTCTAGCAGCTATGGTTCTCAACAGAATGGTTATAATTCTTCTCAGAATACAGTGTATGGTATTACACCTAATGGTAGAAGGTCCAAATTCTTTTGTGAAAATTGCAAAGTCTATGGGCATAGCATTGATAGGTGTTATAAGGTTCATGGTTATCCCAATGATAAAGGCAAGAAAGCTATGAATTGTCTTCAAGGTGATATTCAAGACACTGGTCAATTGTCTTTTGGTTCTGATGCTTCTGATTGCAAGTCTATTAGTCAAGACCAGTACAATCATCTTCTTCAGATCATGCAGCAGCACAACATTGATTCCATACCTTCTTCTTCTTCTGGTGGTGGTCATGCACAACCTTCTGCTTTCTTGGCTGGTAAGGCCTTATGTCTCTTTTCTTCTAGCATTAATCTAAAATGGATCATTGATAGTGGGGCTACTGATCAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_402073.p1 GENE.S_Transcript_402073~~S_Transcript_402073.p1 ORF type:3prime_partial len:424 (+),score=84.84,UBN2_3|PF14244.2|2.8e-42,Retrotrans_gag|PF03732.13|4.5e-10 S_Transcript_402073:482-1750(+)
MMTSSSSNSNLNSTQTTIDVNNELYIHHSDVSHNFTLATRKFNGDNYGERKRSAEITLSAKNKLGFVKGTCKKPDSTSPLLSHWERCNNLVISWILHSVEPEIGRSILYYTTAAEIWTELHDRYSHSNAPRKYQVHNHIASIAQGNRTVTEYYTELKTSWDEYMSLFNLSACTCGSGNAFMDILQEQQLLQFLLKLNDDFKTARGNILMRQPLPTLSHAYRLILQEEKQRECSHSFSLGSDSAALVARNGNGNFRPHFPGNKSTNPRWNSGKQNSSTSSSYGSQQNGYNSSQNTVYGITPNGRRSKFFCENCKVYGHSIDRCYKVHGYPNDKGKKAMNCLQGDIQDTGQLSFGSDASDCKSISQDQYNHLLQIMQQHNIDSIPSSSSGGGHAQPSAFLAGKALCLFSSSINLKWIIDSGATDH

Click here to download the sequence:
Link to NCBI Protein BLAST