Transcript Information: S_Transcript_402878.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value7E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.4158281442997
Replicate 20.68946217367234
Replicate 30.28816775130626
Condition 2: 8 Hour
Replicate 11.4994415066734
Replicate 20.87390033748932
Replicate 31.1657104158974
Condition 3: 24 Hour
Replicate 10.34132630454053
Replicate 20.35412205588043
Replicate 30.59114166574491


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_402878.p1 GENE.S_Transcript_402878~~S_Transcript_402878.p1 ORF type:3prime_partial len:128 (+),score=22.22,UBN2_3|PF14244.2|7.9e-31,Retrotrans_gag|PF03732.13|4.1e+03,Retrotrans_gag|PF03732.13|2.9e-07 S_Transcript_402878:474-854(+)
ATGGAGATAGCTTTGGCGACTAAAAGGAAACTTGGATTTGTGAAGGGAGCTATGGTGAGAAATGCTGATGATCCAATAAAAGCTGATCAGTGGGACACTTGCAACTCTATGGTAATTGCCTGGCTTCTTAACTCAATGATTGAATCTGTTACACGCTCAGTTTTGTACATAGACTCTGCTTGTGCTATGTGGTTGCATCTTGAGAATAGATTTTCTGTGAGTAATGGAGCTAGAAAATACAAAATCAATAAAGAGATTTATGATTTGAGGCAGAATGGAACTAGTATCAATGACTTCTATACTAAGATGAGATGTCTTTGGGAAGAGTTAGACTCTATGAGTAATTTGCCAAAGATTACTGAATTTACTGAAGAAATTAAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_402878.p1 GENE.S_Transcript_402878~~S_Transcript_402878.p1 ORF type:3prime_partial len:128 (+),score=22.22,UBN2_3|PF14244.2|7.9e-31,Retrotrans_gag|PF03732.13|4.1e+03,Retrotrans_gag|PF03732.13|2.9e-07 S_Transcript_402878:474-854(+)
MEIALATKRKLGFVKGAMVRNADDPIKADQWDTCNSMVIAWLLNSMIESVTRSVLYIDSACAMWLHLENRFSVSNGARKYKINKEIYDLRQNGTSINDFYTKMRCLWEELDSMSNLPKITEFTEEIK

Click here to download the sequence:
Link to NCBI Protein BLAST