Transcript Information: S_Transcript_40310.p1


Annotated TAIR IDAT1G15215.2
Annotated Gene NameBEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:5238096-5239770 | Forward length=258
E-Value1E-54
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.385925103166
Replicate 213.112790020032
Replicate 311.019244829824
Condition 2: 8 Hour
Replicate 116.16169517745
Replicate 216.60300716659
Replicate 314.813843775789
Condition 3: 24 Hour
Replicate 117.036261338577
Replicate 213.683810763078
Replicate 311.817876152083


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_40310.p1 GENE.S_Transcript_40310~~S_Transcript_40310.p1 ORF type:5prime_partial len:318 (+),score=50.88,SAWADEE|PF16719.1|2.7e-40,Homeobox|PF00046.25|5.4e-06 S_Transcript_40310:1-954(+)
TGGTCATTATGGCTTCATAGGCTCAACACAAAACATACCCATTTGTCTCTGTCACGTAGTATAAATTTACTTTGCATAGAGCATTTTGAAGTTTGCAAAATCCTCTCCAAAAAACAGAAAAAAGGAAAAAAAAAAGTAGGGTTTTGTTTTGTCGAAGGTATTTGTTACAAAATGGATCGTTTAAGGCCAAGGGAAAGGAAGGGGGTCTTTTCTGGGTTCACTGATACCGAGGTTGAGAAGCTGGAAAAATTGTTTGCAGAATGTGGAGAACAGTCACTGAACCGAAAAATATATCAAAGAGTTGCAAAAAGTTTTAGTCGCTCTGCTGCACGAGCTGGAAAACCTGTTGTAAAGGTAGATCAGGTGCAAAATTGGTTCCAAAACAGGCAGAAAACGTCTCCAATTAAAGTAAATCCACCATCCATCCAGCAAAAAGAGATTACTCCTTCCCCGGATGTGTCTAAAAATTTAGGTGCTCATCCGGATGCCTCTGACCAAAAGAAGGCCAATGAAACTAACGAAGTGCCTAAAGGGAAGAAGTTACCAGATTTATCAGAGTTGGAGTTTGAGGCTAGGTCATCAAGGGACGGCGCATGGTATGATGTTGATAGATTCCTTACCCACAGATTCATTAGCTCAACAGGTGAAGCTGAAGTTCGTGTTAGATTTGTAGGATTTGGGGCTGAAGAGGATGAGTGGGTTAATGTTAAGAATGATGTGCGAGAACAATCTATCCCCCTGGAGAACTGGGAATGTCAGACCGTCAAAGTTGGTGACGGCATGCTCTGCCTTCAGGAAAGAAAAGATCAAGCAATATACTATGATGCACATATTCTAGACATTCAAAGAAAAATGCATGATATAAGGGGCTGCAGGTGCATATTCCTGATCCAGTATGACCATGATAAGAGCGAGGAAAAGGTTCGATTGAGGAGATTATGTCGCAGGCCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_40310.p1 GENE.S_Transcript_40310~~S_Transcript_40310.p1 ORF type:5prime_partial len:318 (+),score=50.88,SAWADEE|PF16719.1|2.7e-40,Homeobox|PF00046.25|5.4e-06 S_Transcript_40310:1-954(+)
WSLWLHRLNTKHTHLSLSRSINLLCIEHFEVCKILSKKQKKGKKKVGFCFVEGICYKMDRLRPRERKGVFSGFTDTEVEKLEKLFAECGEQSLNRKIYQRVAKSFSRSAARAGKPVVKVDQVQNWFQNRQKTSPIKVNPPSIQQKEITPSPDVSKNLGAHPDASDQKKANETNEVPKGKKLPDLSELEFEARSSRDGAWYDVDRFLTHRFISSTGEAEVRVRFVGFGAEEDEWVNVKNDVREQSIPLENWECQTVKVGDGMLCLQERKDQAIYYDAHILDIQRKMHDIRGCRCIFLIQYDHDKSEEKVRLRRLCRRP*

Click here to download the sequence:
Link to NCBI Protein BLAST