Transcript Information: S_Transcript_403365.p1


Annotated TAIR IDAT5G17360.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: DNA LIGASE 6 (TAIR:AT1G66730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:5720620-5721147 | Forward length=175
E-Value1E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.27927581718373
Replicate 30.23345235548862
Condition 2: 8 Hour
Replicate 10.26994164958396
Replicate 20.56637591492979
Replicate 30.26982085575926
Condition 3: 24 Hour
Replicate 10.27651751253917
Replicate 20.14344184541992
Replicate 30.79816596218722


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_403365.p1 GENE.S_Transcript_403365~~S_Transcript_403365.p1 ORF type:internal len:158 (+),score=32.50 S_Transcript_403365:3-473(+)
GTGATCAAGTTAGATGAGATTTTGGAATCGCCAAAAGAAGAGCCAGGTTTGAGCGATGTGAATTCTGATAAAGAAGCTGACTCGCATACCATGATAGATCCTTCTACTTCTTTGGACGAGACTGGTTCACTTCATTTGGCCTTATTGAGTGATAAGGAAAAGGAGGAGATTATGCAAGAGCTACGTCATTGTCTCCCCATCGGGGTCTCTGATGATCAAGTGCTGGATCTCATCCGAATCTCTGGCAGAAACATTGTTGACTCTGTATCTTATTTTTATGAACATGAAACTGAATTTCATGAACAGAGTTCAACCTCTCTATCTTTATCCCAGTCAAAATCAGAAAGTAGTTGCACCGTAGTTCCAAGGAGTGGCTCTGATGAGGGCAGTCTTCCAACAACCGTAAAGTTGGCCTATCAGAAACTCAAATTCTCCCCACTGAAGCCTTCAGTTCGGAGCAGTGTTTCTCCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_403365.p1 GENE.S_Transcript_403365~~S_Transcript_403365.p1 ORF type:internal len:158 (+),score=32.50 S_Transcript_403365:3-473(+)
VIKLDEILESPKEEPGLSDVNSDKEADSHTMIDPSTSLDETGSLHLALLSDKEKEEIMQELRHCLPIGVSDDQVLDLIRISGRNIVDSVSYFYEHETEFHEQSSTSLSLSQSKSESSCTVVPRSGSDEGSLPTTVKLAYQKLKFSPLKPSVRSSVSP

Click here to download the sequence:
Link to NCBI Protein BLAST