Transcript Information: S_Transcript_403917.p1


Annotated TAIR IDAT3G22690.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:8021347-8024534 | Reverse length=938
E-Value2E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.29902248578855
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_403917.p1 GENE.S_Transcript_403917~~S_Transcript_403917.p1 ORF type:5prime_partial len:89 (-),score=11.49,PPR|PF01535.16|8.8e-06,PPR|PF01535.16|2.1e+03 S_Transcript_403917:41-307(-)
ATATCCTATGCTAGGACAATCTTTGACCTTTTGGTTATTAGGACTGAAATCACTTGGAGTGCAATGATTGGAGCATATGTTTTATGTGATCATATGATAGAAGCTTTGGAATTTTTTGACTGTATGTTGCTTCAGGATTCTGGAAGTCCATCATCTGTTACTTTTGGATGTGCTCTCCGAGCTTGTACTAAGTTGATTTATATAAGAAATGGAAGAAGGATCTATCCCATGGTCACATTCTCAAATCAGGGCATATTTCAGATTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_403917.p1 GENE.S_Transcript_403917~~S_Transcript_403917.p1 ORF type:5prime_partial len:89 (-),score=11.49,PPR|PF01535.16|8.8e-06,PPR|PF01535.16|2.1e+03 S_Transcript_403917:41-307(-)
ISYARTIFDLLVIRTEITWSAMIGAYVLCDHMIEALEFFDCMLLQDSGSPSSVTFGCALRACTKLIYIRNGRRIYPMVTFSNQGIFQI*

Click here to download the sequence:
Link to NCBI Protein BLAST