Transcript Information: S_Transcript_40486.p1


Annotated TAIR IDAT2G16950.1
Annotated Gene Nametransportin 1
Annotated Gene Symbol(s)TRN1, ATTRN1
Annotation TypeOrtholog
Chromosome Positionchr2:7353939-7360637 | Forward length=895
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.430103134733
Replicate 235.10325399989
Replicate 337.50366443816
Condition 2: 8 Hour
Replicate 135.407296101966
Replicate 236.769820501718
Replicate 336.796630781783
Condition 3: 24 Hour
Replicate 131.998482967787
Replicate 230.66578303794
Replicate 329.026486857284


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_40486.p1 GENE.S_Transcript_40486~~S_Transcript_40486.p1 ORF type:complete len:895 (+),score=203.57,HEAT_EZ|PF13513.2|11,HEAT_EZ|PF13513.2|59,HEAT_EZ|PF13513.2|70,HEAT_EZ|PF13513.2|56,HEAT_EZ|PF13513.2|4.6e+02,HEAT_EZ|PF13513.2|4.5e+03,HEAT_EZ|PF13513.2|8.9e-12,HEAT_EZ|PF13513.2|0.31,HEAT_EZ|PF13513.2|4.9e+02,HEAT_EZ|PF13513.2|16,HEAT_EZ|PF13513.2|0.0049,HEAT|PF02985.18|1.6e+04,HEAT|PF02985.18|4.6e+02,HEAT|PF02985.18|10,HEAT|PF02985.18|5.6e+03,HEAT|PF02985.18|0.0078,HEAT|PF02985.18|1.2e+04,HEAT|PF02985.18|1.6e+04,HEAT|PF02985.18|0.00014,HEAT|PF02985.18|0.11,HEAT|PF02985.18|12,HEAT|PF02985.18|0.00092,HEAT|PF02985.18|4.3e+02,HEAT|PF02985.18|6.1e+03,HEAT_2|PF13646.2|0.06,HEAT_2|PF13646.2|0.34,HEAT_2|PF13646.2|0.41,HEAT_2|PF13646.2|0.26,HEAT_2|PF13646.2|0.51,HEAT_2|PF13646.2|0.00066,HEAT_2|PF13646.2|0.044,HEAT_2|PF13646.2|0.96,HEAT_2|PF13646.2|1.1e+02,IBN_N|PF03810.15|1.1e-14,Cnd1|PF12717.3|6.9e+03,Cnd1|PF12717.3|0.0038,Cnd1|PF12717.3|43,Cnd1|PF12717.3|2.8e+02,Vac14_Fab1_bd|PF12755.3|6.2e+03,Vac14_Fab1_bd|PF12755.3|0.25,Vac14_Fab1_bd|PF12755.3|6.6,Vac14_Fab1_bd|PF12755.3|1.2e+02,Vac14_Fab1_bd|PF12755.3|82,Vac14_Fab1_bd|PF12755.3|3.2e+03,CLASP_N|PF12348.4|3e+03,CLASP_N|PF12348.4|80,CLASP_N|PF12348.4|0.13,CLASP_N|PF12348.4|59,CLASP_N|PF12348.4|17,Adaptin_N|PF01602.16|0.048,Adaptin_N|PF01602.16|1.4,Adaptin_N|PF01602.16|59,Adaptin_N|PF01602.16|3.4e+02 S_Transcript_40486:209-2893(+)
ATGACGGCATTTTCCGGGGCCGGGTCGTTGTGGCAACCGCAAGAGCAGGGAATAAAGGAGATATGTGGATTATTGGAGCAGCAAATATCACCTGTCTCCACTTCTGAGAAATCCCAGATTTGGCAGCAGCTTCAACACTATTCCCAGTTCCCGGATTTCAATAATTACCTCACTTTCATCTTGTCTCATGCTGAAGTGAAGCCTGTGGAGGTTCGGCAGGCTGCTGGCTTACTTCTGAAGAATAATCTCAGAACTGCTTTCAAATCTATGACCCCGGCAAATCAGCAATATATAAAGTCGGAGTTGTTGCCTTGTTTAGGGTCACCTGATCGGAACATCCGTACCACTGCTGGGACCATTGTAAGCGTTATTGTGCAGTTGGTCGGGGTTGCTGGTTGGCCGGAGCTGTTGCAGGCTCTTTTAGCATATTTAGATAGTAGTGATCCCAGTCATGTTGAAGGTGCAATGGATGCTCTATCTAAGATTTGTGAAGATGTACCTCAAGTGCTTGATTCAGATGTTCCAGGAATGGCTGAACGCCCCATCAATGTTTTTCTCCCAAAATTGTTTGAGTTTTTCCGGTCAACACATGTCTTGCTGAGGAAGCTTGCATTGAATTCTGTCAACCAGTACATTATGTTAATGCCATCATATTTGTATATGTCCATGGACCAATATCTTCAAGGCTTGTTTCTTCTCGCTAATGACCCTGCTCCAGAGGTGCGAAAACTGGTCTGCTCGGCTTTTGTTCAGCTTGTGGAAGTGAAACCTTCTTTTCTTGAGCCCCATTTGAGAAATGTTATAGAGTACATGCTGCAAGTGAACAAGGATAGTGACGAGGAAGTAGCACTTGAAGCTTGTGAATTTTGGTCCGCGTATTGTGATGCCCAATTACCACCTGAGAACCTGATCGAGTTCTTGCCACGGCTTATTCCTGTACTGTTGTCGAATATGGTCTATGCTGATGATGATGAGTCCTTAGCTGAAGCCGAGGAGGATGAGTCTGTGCCAGACCGCGATCAAGATTTGAAGCCACGGTTCCATGCATCGCGACTTCATGGCTCAGACGATCTGGAAGAGGATGATGATGTTGTCAATGTGTGGAATCTGCGGAAATGTAGTGCGGCTGCTTTAGATTACTTCTCCAATGTTTTTGGGGATGAGATTCTCCCTACACTACTGCCTTTAATTCAGGCTAATTTATCAAAGAGTGGTGATGAATCCTGGAAAGAAAGAGAAGCTGCAGTTTTAGCCATTGGTGCTGTGGCTGAGGGTTGCATTAATGGTTTATACCCTCATCTTTCAGAGATTGTATCCTTTCTCATTCCTCTCTTGGATGATAATTTTCCTCTTATACGGAGCATTTCTTGTTGGACACTTTCTCGTTTCAGCAAATATGTTGTTCAGGGTATTGGGCATCCAAAGGGTAACGAACAGTTTGAGAAGGTATTAATGGGTCTTCTTGGAAGAATATTGGACACCAACAAACGTGTACAGGAAGCCGCCTGCTCAGCTTTTGCAACACTTGAAGAGGAAGCCGCTGAAGAGTTGGCACCGCAGCTAGAGATTATATTGCAGCACTTAATGTGTGCATATGGGAAATATCAGAAAAAGAATTTGAGGATTGTATATGATGCCATTGGAACTCTAGCTGATGCTGTTGGAGAAGAGCTAAATCAGCCTAGGTACCTGGAAATCCTAATGCCTCCGCTTATTGCAAAGTGGCAGCAGCTTTCAAATTTTGACAGAGATATTTTCCCATTGCTGGAGTGCTTTACATCCATAGCACAGGCGTTGGGACCAGGATTTTCCCAGTTTGCTGAACCTGTATTCCAGCGATGCATAAACATTGTTCAGACTCAACAAATGGCAAAGGTCAACCCTGCTTCTGCAGGCATTCAGTATGATAGAGAGTTTGTTGTTTGCTCTCTTGATTTGCTTTCTGGTCTTGTGGAGGGTCTTGGCAGCGGTATAGAGGGTTTGGTGTCACAAAGTATTTTGAGGGATTTGCTTTTGCAATGCTGTATGGATGATGCTGCCGACGTTCGCCAGAGTGCTTTTGCATTACTTGGAGACCTAGCAAGAGTTTGTCCTGTTTATCTTCACCCTTGCTTGCCACAGTTCCTTGACATCGCAGCTAAGCAACTGGACACTTCTAAGCTGAGGGATACAATTTCTGTGGCAAACAATGCTTGTTGGGCTATTGGGGAATTGGCAGTCAAGGTCCGGCAAGAGATTTCTCCTGTAGTTATGACAGTTGTCTCCTCTCTAGTTCCGGTACTTCAACATGCAGAGGAGCTGAATAAGTCGCTTATGGAAAATGCTGCCATTACTCTTGGGAGGTTTGCCTGGGTGTGTCCTGAGCTTGTATCACCTCATATGGAGCATTTTATGCAAGCCTGGTGCAGTGCTTTATCTATGATACGTGATGATATTGAGAAAGAAGATGCCTTTCGAGGCTTATGTGCAATGGTTAAAATGAATCCTACTGCAGCTTTGAATTCACTTCCCGTGATGTTGAAAGCAATTGCTAGTTGGCATGAAATTAGAAGCCAGGATCTGCAAAATGATGTACAACATGTGTTACGTGGTTATAAACAGATGCTTGCTAATGGACAGTGGGAGCAGTGTGTTGCTTCTTTGGACGCACCTATAAAGGACAAGTTGTCAAAGTATCAAGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_40486.p1 GENE.S_Transcript_40486~~S_Transcript_40486.p1 ORF type:complete len:895 (+),score=203.57,HEAT_EZ|PF13513.2|11,HEAT_EZ|PF13513.2|59,HEAT_EZ|PF13513.2|70,HEAT_EZ|PF13513.2|56,HEAT_EZ|PF13513.2|4.6e+02,HEAT_EZ|PF13513.2|4.5e+03,HEAT_EZ|PF13513.2|8.9e-12,HEAT_EZ|PF13513.2|0.31,HEAT_EZ|PF13513.2|4.9e+02,HEAT_EZ|PF13513.2|16,HEAT_EZ|PF13513.2|0.0049,HEAT|PF02985.18|1.6e+04,HEAT|PF02985.18|4.6e+02,HEAT|PF02985.18|10,HEAT|PF02985.18|5.6e+03,HEAT|PF02985.18|0.0078,HEAT|PF02985.18|1.2e+04,HEAT|PF02985.18|1.6e+04,HEAT|PF02985.18|0.00014,HEAT|PF02985.18|0.11,HEAT|PF02985.18|12,HEAT|PF02985.18|0.00092,HEAT|PF02985.18|4.3e+02,HEAT|PF02985.18|6.1e+03,HEAT_2|PF13646.2|0.06,HEAT_2|PF13646.2|0.34,HEAT_2|PF13646.2|0.41,HEAT_2|PF13646.2|0.26,HEAT_2|PF13646.2|0.51,HEAT_2|PF13646.2|0.00066,HEAT_2|PF13646.2|0.044,HEAT_2|PF13646.2|0.96,HEAT_2|PF13646.2|1.1e+02,IBN_N|PF03810.15|1.1e-14,Cnd1|PF12717.3|6.9e+03,Cnd1|PF12717.3|0.0038,Cnd1|PF12717.3|43,Cnd1|PF12717.3|2.8e+02,Vac14_Fab1_bd|PF12755.3|6.2e+03,Vac14_Fab1_bd|PF12755.3|0.25,Vac14_Fab1_bd|PF12755.3|6.6,Vac14_Fab1_bd|PF12755.3|1.2e+02,Vac14_Fab1_bd|PF12755.3|82,Vac14_Fab1_bd|PF12755.3|3.2e+03,CLASP_N|PF12348.4|3e+03,CLASP_N|PF12348.4|80,CLASP_N|PF12348.4|0.13,CLASP_N|PF12348.4|59,CLASP_N|PF12348.4|17,Adaptin_N|PF01602.16|0.048,Adaptin_N|PF01602.16|1.4,Adaptin_N|PF01602.16|59,Adaptin_N|PF01602.16|3.4e+02 S_Transcript_40486:209-2893(+)
MTAFSGAGSLWQPQEQGIKEICGLLEQQISPVSTSEKSQIWQQLQHYSQFPDFNNYLTFILSHAEVKPVEVRQAAGLLLKNNLRTAFKSMTPANQQYIKSELLPCLGSPDRNIRTTAGTIVSVIVQLVGVAGWPELLQALLAYLDSSDPSHVEGAMDALSKICEDVPQVLDSDVPGMAERPINVFLPKLFEFFRSTHVLLRKLALNSVNQYIMLMPSYLYMSMDQYLQGLFLLANDPAPEVRKLVCSAFVQLVEVKPSFLEPHLRNVIEYMLQVNKDSDEEVALEACEFWSAYCDAQLPPENLIEFLPRLIPVLLSNMVYADDDESLAEAEEDESVPDRDQDLKPRFHASRLHGSDDLEEDDDVVNVWNLRKCSAAALDYFSNVFGDEILPTLLPLIQANLSKSGDESWKEREAAVLAIGAVAEGCINGLYPHLSEIVSFLIPLLDDNFPLIRSISCWTLSRFSKYVVQGIGHPKGNEQFEKVLMGLLGRILDTNKRVQEAACSAFATLEEEAAEELAPQLEIILQHLMCAYGKYQKKNLRIVYDAIGTLADAVGEELNQPRYLEILMPPLIAKWQQLSNFDRDIFPLLECFTSIAQALGPGFSQFAEPVFQRCINIVQTQQMAKVNPASAGIQYDREFVVCSLDLLSGLVEGLGSGIEGLVSQSILRDLLLQCCMDDAADVRQSAFALLGDLARVCPVYLHPCLPQFLDIAAKQLDTSKLRDTISVANNACWAIGELAVKVRQEISPVVMTVVSSLVPVLQHAEELNKSLMENAAITLGRFAWVCPELVSPHMEHFMQAWCSALSMIRDDIEKEDAFRGLCAMVKMNPTAALNSLPVMLKAIASWHEIRSQDLQNDVQHVLRGYKQMLANGQWEQCVASLDAPIKDKLSKYQV*

Click here to download the sequence:
Link to NCBI Protein BLAST